Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
MSH4O15457 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
MSH4O15457 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH4O15457 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.31■■□□□ 1.32
MSH4O15457 MKRN4P-201ENST00000444706 1521 ntBASIC23.31■■□□□ 1.32
MSH4O15457 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH4O15457 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH4O15457 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH4O15457 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH4O15457 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH4O15457 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH4O15457 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH4O15457 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH4O15457 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH4O15457 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH4O15457 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
MSH4O15457 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH4O15457 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH4O15457 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
MSH4O15457 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH4O15457 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.29■■□□□ 1.32
MSH4O15457 AL138781.1-201ENST00000566567 1274 ntBASIC23.29■■□□□ 1.32
MSH4O15457 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH4O15457 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH4O15457 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH4O15457 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH4O15457 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH4O15457 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
MSH4O15457 AC005229.4-201ENST00000610085 2198 ntBASIC23.28■■□□□ 1.32
MSH4O15457 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH4O15457 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH4O15457 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH4O15457 SLC29A4P1-201ENST00000398760 971 ntBASIC23.28■■□□□ 1.32
MSH4O15457 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.28■■□□□ 1.32
MSH4O15457 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.28■■□□□ 1.32
MSH4O15457 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH4O15457 AC142086.2-201ENST00000569753 217 ntBASIC23.28■■□□□ 1.32
MSH4O15457 AC011484.1-201ENST00000377652 1995 ntBASIC23.28■■□□□ 1.32
MSH4O15457 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.28■■□□□ 1.32
MSH4O15457 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH4O15457 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
MSH4O15457 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
MSH4O15457 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
MSH4O15457 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH4O15457 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH4O15457 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.27■■□□□ 1.32
MSH4O15457 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH4O15457 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
MSH4O15457 AL355802.2-201ENST00000402069 882 ntBASIC23.27■■□□□ 1.32
MSH4O15457 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH4O15457 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH4O15457 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.27■■□□□ 1.32
MSH4O15457 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.27■■□□□ 1.32
MSH4O15457 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.27■■□□□ 1.32
MSH4O15457 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.27■■□□□ 1.32
MSH4O15457 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.27■■□□□ 1.32
MSH4O15457 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.27■■□□□ 1.32
MSH4O15457 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH4O15457 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
MSH4O15457 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
MSH4O15457 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
MSH4O15457 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
MSH4O15457 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.31
MSH4O15457 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.27■■□□□ 1.31
MSH4O15457 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
MSH4O15457 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.27■■□□□ 1.31
MSH4O15457 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH4O15457 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.26■■□□□ 1.31
MSH4O15457 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH4O15457 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH4O15457 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH4O15457 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.26■■□□□ 1.31
MSH4O15457 MIPEPP3-201ENST00000412105 444 ntBASIC23.26■■□□□ 1.31
MSH4O15457 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH4O15457 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.26■■□□□ 1.31
MSH4O15457 AC100791.3-201ENST00000617619 330 ntBASIC23.26■■□□□ 1.31
MSH4O15457 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
MSH4O15457 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
MSH4O15457 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH4O15457 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH4O15457 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.25■■□□□ 1.31
MSH4O15457 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.25■■□□□ 1.31
MSH4O15457 AL355472.2-201ENST00000422958 438 ntBASIC23.25■■□□□ 1.31
MSH4O15457 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.25■■□□□ 1.31
MSH4O15457 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
MSH4O15457 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
MSH4O15457 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.25■■□□□ 1.31
MSH4O15457 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
MSH4O15457 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.24■■□□□ 1.31
MSH4O15457 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
MSH4O15457 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms