Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.12■□□□□ 0.81
HDAC3O15379 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.12■□□□□ 0.81
HDAC3O15379 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC3O15379 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.11■□□□□ 0.81
HDAC3O15379 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC3O15379 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HDAC3O15379 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC3O15379 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.11■□□□□ 0.81
HDAC3O15379 AC233992.3-201ENST00000607491 485 ntBASIC20.11■□□□□ 0.81
HDAC3O15379 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HDAC3O15379 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC3O15379 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC3O15379 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC3O15379 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC3O15379 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC3O15379 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
HDAC3O15379 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC3O15379 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
HDAC3O15379 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC3O15379 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC3O15379 AC131281.2-201ENST00000520478 145 ntBASIC20.1■□□□□ 0.81
HDAC3O15379 IGHV3-19-201ENST00000521488 291 ntBASIC20.1■□□□□ 0.81
HDAC3O15379 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.1■□□□□ 0.81
HDAC3O15379 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC3O15379 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC3O15379 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC3O15379 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC3O15379 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HDAC3O15379 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.09■□□□□ 0.81
HDAC3O15379 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
HDAC3O15379 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 MIR4767-201ENST00000582827 78 ntBASIC20.09■□□□□ 0.81
HDAC3O15379 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.09■□□□□ 0.81
HDAC3O15379 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC3O15379 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.09■□□□□ 0.81
HDAC3O15379 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
HDAC3O15379 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.08■□□□□ 0.81
HDAC3O15379 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.08■□□□□ 0.81
HDAC3O15379 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
HDAC3O15379 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 AC126544.1-201ENST00000580842 1059 ntBASIC20.08■□□□□ 0.81
HDAC3O15379 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HDAC3O15379 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDAC3O15379 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HDAC3O15379 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HDAC3O15379 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HDAC3O15379 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.07■□□□□ 0.8
HDAC3O15379 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HDAC3O15379 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.07■□□□□ 0.8
HDAC3O15379 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.07■□□□□ 0.8
HDAC3O15379 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.07■□□□□ 0.8
HDAC3O15379 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HDAC3O15379 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
HDAC3O15379 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC3O15379 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC3O15379 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.06■□□□□ 0.8
HDAC3O15379 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.06■□□□□ 0.8
HDAC3O15379 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC3O15379 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.06■□□□□ 0.8
HDAC3O15379 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.06■□□□□ 0.8
HDAC3O15379 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDAC3O15379 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms