Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC188H7C350 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CCDC188H7C350 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC188H7C350 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC188H7C350 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CCDC188H7C350 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC188H7C350 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC188H7C350 AC005224.4-201ENST00000583262 1652 ntBASIC21.5■■□□□ 1.03
CCDC188H7C350 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC188H7C350 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CCDC188H7C350 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
CCDC188H7C350 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CCDC188H7C350 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC188H7C350 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CCDC188H7C350 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC188H7C350 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC188H7C350 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC188H7C350 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC188H7C350 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CCDC188H7C350 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC188H7C350 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC188H7C350 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC188H7C350 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC188H7C350 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC188H7C350 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC188H7C350 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC188H7C350 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC188H7C350 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC188H7C350 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC188H7C350 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC188H7C350 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC188H7C350 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC188H7C350 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC188H7C350 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC188H7C350 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC188H7C350 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC188H7C350 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC188H7C350 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC188H7C350 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CCDC188H7C350 IGHV3-19-201ENST00000521488 291 ntBASIC21.46■■□□□ 1.03
CCDC188H7C350 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC188H7C350 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.46■■□□□ 1.03
CCDC188H7C350 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC188H7C350 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC188H7C350 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC188H7C350 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CCDC188H7C350 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC188H7C350 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC188H7C350 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.03
CCDC188H7C350 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
CCDC188H7C350 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC188H7C350 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 AC233992.3-201ENST00000607491 485 ntBASIC21.45■■□□□ 1.02
CCDC188H7C350 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC188H7C350 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC188H7C350 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
CCDC188H7C350 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC188H7C350 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC188H7C350 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC188H7C350 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CCDC188H7C350 AC092720.2-201ENST00000602388 1665 ntBASIC21.44■■□□□ 1.02
CCDC188H7C350 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
CCDC188H7C350 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
CCDC188H7C350 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CCDC188H7C350 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC188H7C350 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC188H7C350 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CCDC188H7C350 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC188H7C350 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms