Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV1-1A0A0B4J248 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 CLTA-210ENST00000540080 989 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 Z92544.1-202ENST00000571933 1220 ntBASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 AC074183.2-201ENST00000623112 922 ntBASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV1-1A0A0B4J248 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV1-1A0A0B4J248 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 AC010141.3-201ENST00000456659 717 ntBASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 AC137630.3-201ENST00000607245 391 ntBASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV1-1A0A0B4J248 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRAV1-1A0A0B4J248 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.14■□□□□ 0.18
TRAV1-1A0A0B4J248 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
TRAV1-1A0A0B4J248 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 AC092720.2-201ENST00000602388 1665 ntBASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 AC133637.1-201ENST00000624115 1537 ntBASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV1-1A0A0B4J248 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV1-1A0A0B4J248 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV1-1A0A0B4J248 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV1-1A0A0B4J248 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms