Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 AC233263.1-201ENST00000578059 224 ntBASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCDHGA1Q9Y5H4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCDHGA1Q9Y5H4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 AC233702.5-201ENST00000584107 538 ntBASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 KRT17P2-201ENST00000300992 1314 ntBASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCDHGA1Q9Y5H4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.96■□□□□ 0.79
PCDHGA1Q9Y5H4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.95■□□□□ 0.79
PCDHGA1Q9Y5H4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 CYP21A1P-202ENST00000354927 1481 ntBASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
PCDHGA1Q9Y5H4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 BX088651.1-201ENST00000540551 451 ntBASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 AP001412.1-201ENST00000608405 714 ntBASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 AC105020.6-201ENST00000621523 1217 ntBASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 AC092053.2-201ENST00000640557 1818 ntBASIC19.94■□□□□ 0.78
PCDHGA1Q9Y5H4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 RPS2P55-201ENST00000397318 883 ntBASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 AC107956.1-201ENST00000494359 873 ntBASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
PCDHGA1Q9Y5H4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms