Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRRC42Q9Y546 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRRC42Q9Y546 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LRRC42Q9Y546 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 LONRF2P2-201ENST00000439212 571 ntBASIC19.55■□□□□ 0.72
LRRC42Q9Y546 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.55■□□□□ 0.72
LRRC42Q9Y546 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.54■□□□□ 0.72
LRRC42Q9Y546 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
LRRC42Q9Y546 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.52■□□□□ 0.72
LRRC42Q9Y546 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LRRC42Q9Y546 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.52■□□□□ 0.71
LRRC42Q9Y546 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LRRC42Q9Y546 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
LRRC42Q9Y546 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
LRRC42Q9Y546 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 RNF126P1-201ENST00000567452 1320 ntBASIC19.51■□□□□ 0.71
LRRC42Q9Y546 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 AL138781.2-201ENST00000617896 1843 ntBASIC19.51■□□□□ 0.71
LRRC42Q9Y546 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 AF131216.4-201ENST00000638924 1588 ntBASIC19.51■□□□□ 0.71
LRRC42Q9Y546 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
LRRC42Q9Y546 OR7E47P-201ENST00000546390 1422 ntBASIC19.51■□□□□ 0.71
LRRC42Q9Y546 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LRRC42Q9Y546 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
LRRC42Q9Y546 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.5■□□□□ 0.71
LRRC42Q9Y546 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LRRC42Q9Y546 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms