Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.97■■□□□ 1.11
CDH9Q9ULB4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CDH9Q9ULB4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 LINC00565-201ENST00000562710 2331 ntBASIC21.96■■□□□ 1.11
CDH9Q9ULB4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CDH9Q9ULB4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CDH9Q9ULB4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
CDH9Q9ULB4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 AC073210.2-201ENST00000430369 194 ntBASIC21.95■■□□□ 1.1
CDH9Q9ULB4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 MIR4758-201ENST00000577688 71 ntBASIC21.95■■□□□ 1.1
CDH9Q9ULB4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CDH9Q9ULB4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.94■■□□□ 1.1
CDH9Q9ULB4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 BX276092.2-201ENST00000417668 665 ntBASIC21.94■■□□□ 1.1
CDH9Q9ULB4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 AC069152.1-201ENST00000438030 544 ntBASIC21.94■■□□□ 1.1
CDH9Q9ULB4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 AC133041.1-202ENST00000642053 222 ntBASIC21.94■■□□□ 1.1
CDH9Q9ULB4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CDH9Q9ULB4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
CDH9Q9ULB4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 MCRIP2P1-201ENST00000394346 511 ntBASIC21.92■■□□□ 1.1
CDH9Q9ULB4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.92■■□□□ 1.1
CDH9Q9ULB4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms