Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 AC007322.4-201ENST00000509611 723 ntBASIC19.67■□□□□ 0.74
SCN3AQ9NY46 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 AC243732.1-201ENST00000612648 864 ntBASIC19.67■□□□□ 0.74
SCN3AQ9NY46 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN3AQ9NY46 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.66■□□□□ 0.74
SCN3AQ9NY46 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.66■□□□□ 0.74
SCN3AQ9NY46 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.66■□□□□ 0.74
SCN3AQ9NY46 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN3AQ9NY46 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SCN3AQ9NY46 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SCN3AQ9NY46 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 AC116050.2-201ENST00000612102 1779 ntBASIC19.63■□□□□ 0.73
SCN3AQ9NY46 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 ID1-201ENST00000376105 1233 ntBASIC19.63■□□□□ 0.73
SCN3AQ9NY46 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 AL355472.2-201ENST00000422958 438 ntBASIC19.63■□□□□ 0.73
SCN3AQ9NY46 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.63■□□□□ 0.73
SCN3AQ9NY46 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms