Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
DDX28Q9NUL7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DDX28Q9NUL7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 LINC01006-201ENST00000333319 2292 ntBASIC18.84■□□□□ 0.61
DDX28Q9NUL7 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
DDX28Q9NUL7 AIRN-201ENST00000601203 4374 ntBASIC18.84■□□□□ 0.61
DDX28Q9NUL7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
DDX28Q9NUL7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 AC133561.4-201ENST00000566112 224 ntBASIC18.83■□□□□ 0.6
DDX28Q9NUL7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.83■□□□□ 0.6
DDX28Q9NUL7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.82■□□□□ 0.6
DDX28Q9NUL7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 UNC93B3-201ENST00000308076 687 ntBASIC18.81■□□□□ 0.6
DDX28Q9NUL7 BX842568.3-201ENST00000418104 571 ntBASIC18.81■□□□□ 0.6
DDX28Q9NUL7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 MIR4767-201ENST00000582827 78 ntBASIC18.81■□□□□ 0.6
DDX28Q9NUL7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
DDX28Q9NUL7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms