Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 AC121338.2-201ENST00000622535 1744 ntBASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SMC4Q9NTJ3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 MFSD11-216ENST00000590393 1141 ntBASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC26.6■■□□□ 1.85
SMC4Q9NTJ3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 UQCRFS1P1-201ENST00000435169 820 ntBASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 AC243732.1-201ENST00000612648 864 ntBASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 AC010536.3-201ENST00000620306 533 ntBASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
SMC4Q9NTJ3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 IKBKGP1-201ENST00000612193 1073 ntBASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC4Q9NTJ3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
SMC4Q9NTJ3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 AC011767.1-201ENST00000617410 1153 ntBASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 AC092437.1-201ENST00000624794 1048 ntBASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMC4Q9NTJ3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 AC091799.1-201ENST00000422823 811 ntBASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.56■■□□□ 1.84
SMC4Q9NTJ3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 AC011484.1-201ENST00000377652 1995 ntBASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC4Q9NTJ3 AC006128.1-201ENST00000624704 1661 ntBASIC26.54■■□□□ 1.84
SMC4Q9NTJ3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC4Q9NTJ3 TERF1P5-201ENST00000477545 1207 ntBASIC26.54■■□□□ 1.84
SMC4Q9NTJ3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.54■■□□□ 1.84
SMC4Q9NTJ3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.54■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms