Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CISHQ9NSE2 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.13■■□□□ 1.13
CISHQ9NSE2 PLK5-205ENST00000642079 1969 ntBASIC22.13■■□□□ 1.13
CISHQ9NSE2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 CNN2P6-201ENST00000439038 900 ntBASIC22.13■■□□□ 1.13
CISHQ9NSE2 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.13■■□□□ 1.13
CISHQ9NSE2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.13■■□□□ 1.13
CISHQ9NSE2 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CISHQ9NSE2 AC013268.1-206ENST00000638368 961 ntBASIC22.13■■□□□ 1.13
CISHQ9NSE2 AC112229.1-201ENST00000639295 961 ntBASIC22.13■■□□□ 1.13
CISHQ9NSE2 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 AC121338.2-201ENST00000622535 1744 ntBASIC22.13■■□□□ 1.13
CISHQ9NSE2 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.13■■□□□ 1.13
CISHQ9NSE2 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CISHQ9NSE2 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CISHQ9NSE2 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 DLX3-202ENST00000512495 834 ntTSL 2 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 AC080038.1-201ENST00000611274 1154 ntBASIC22.12■■□□□ 1.13
CISHQ9NSE2 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.12■■□□□ 1.13
CISHQ9NSE2 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CISHQ9NSE2 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CISHQ9NSE2 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
CISHQ9NSE2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CISHQ9NSE2 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CISHQ9NSE2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CISHQ9NSE2 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CISHQ9NSE2 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CISHQ9NSE2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CISHQ9NSE2 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.11■■□□□ 1.13
CISHQ9NSE2 AC007322.4-201ENST00000509611 723 ntBASIC22.11■■□□□ 1.13
CISHQ9NSE2 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CISHQ9NSE2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.11■■□□□ 1.13
CISHQ9NSE2 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CISHQ9NSE2 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CISHQ9NSE2 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 AC011484.1-201ENST00000377652 1995 ntBASIC22.1■■□□□ 1.13
CISHQ9NSE2 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 VPS53-216ENST00000574029 585 ntTSL 4 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
CISHQ9NSE2 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CISHQ9NSE2 AC116050.2-201ENST00000612102 1779 ntBASIC22.1■■□□□ 1.13
CISHQ9NSE2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CISHQ9NSE2 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.09■■□□□ 1.13
CISHQ9NSE2 AC073111.5-205ENST00000641717 521 ntBASIC22.09■■□□□ 1.13
CISHQ9NSE2 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CISHQ9NSE2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CISHQ9NSE2 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.08■■□□□ 1.13
CISHQ9NSE2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CISHQ9NSE2 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CISHQ9NSE2 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CISHQ9NSE2 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
CISHQ9NSE2 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
CISHQ9NSE2 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CISHQ9NSE2 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CISHQ9NSE2 AL591742.1-201ENST00000604433 565 ntBASIC22.08■■□□□ 1.13
CISHQ9NSE2 AC231657.2-201ENST00000624556 255 ntBASIC22.08■■□□□ 1.13
CISHQ9NSE2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
CISHQ9NSE2 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CISHQ9NSE2 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
CISHQ9NSE2 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
CISHQ9NSE2 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CISHQ9NSE2 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CISHQ9NSE2 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CISHQ9NSE2 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms