Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHFRQ96EP1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHFRQ96EP1 KRT18P68-201ENST00000392293 1000 ntBASIC21.2■□□□□ 0.98
CHFRQ96EP1 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 AC233263.1-201ENST00000578059 224 ntBASIC21.2■□□□□ 0.98
CHFRQ96EP1 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHFRQ96EP1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHFRQ96EP1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHFRQ96EP1 CYP21A1P-202ENST00000354927 1481 ntBASIC21.2■□□□□ 0.98
CHFRQ96EP1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.2■□□□□ 0.98
CHFRQ96EP1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 AC007322.3-201ENST00000426526 701 ntBASIC21.19■□□□□ 0.98
CHFRQ96EP1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHFRQ96EP1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.19■□□□□ 0.98
CHFRQ96EP1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.18■□□□□ 0.98
CHFRQ96EP1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.18■□□□□ 0.98
CHFRQ96EP1 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CHFRQ96EP1 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.18■□□□□ 0.98
CHFRQ96EP1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.18■□□□□ 0.98
CHFRQ96EP1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CHFRQ96EP1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHFRQ96EP1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CHFRQ96EP1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHFRQ96EP1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 AC008550.1-201ENST00000511500 884 ntBASIC21.16■□□□□ 0.98
CHFRQ96EP1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHFRQ96EP1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.16■□□□□ 0.98
CHFRQ96EP1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CHFRQ96EP1 AC092368.3-202ENST00000574180 1591 ntBASIC21.15■□□□□ 0.98
CHFRQ96EP1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.15■□□□□ 0.98
CHFRQ96EP1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.15■□□□□ 0.98
CHFRQ96EP1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CHFRQ96EP1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.15■□□□□ 0.98
CHFRQ96EP1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.15■□□□□ 0.98
CHFRQ96EP1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms