Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 AC013268.1-206ENST00000638368 961 ntBASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 AC112229.1-201ENST00000639295 961 ntBASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CTHRC1Q96CG8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CTHRC1Q96CG8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 CNN2P6-201ENST00000439038 900 ntBASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 AL162412.1-201ENST00000567129 965 ntBASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.26■□□□□ 0.67
CTHRC1Q96CG8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CTHRC1Q96CG8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 AL591742.1-201ENST00000604433 565 ntBASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 AL137784.2-201ENST00000607332 1000 ntBASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CTHRC1Q96CG8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 AC007322.3-201ENST00000426526 701 ntBASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CTHRC1Q96CG8 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.22■□□□□ 0.67
CTHRC1Q96CG8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms