Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23■■□□□ 1.27
CCDC65Q8IXS2 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CCDC65Q8IXS2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC65Q8IXS2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC65Q8IXS2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC65Q8IXS2 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC65Q8IXS2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.99■■□□□ 1.27
CCDC65Q8IXS2 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 MYCNOS-205ENST00000641950 531 ntBASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 AC011484.1-201ENST00000377652 1995 ntBASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CCDC65Q8IXS2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 AC243732.1-201ENST00000612648 864 ntBASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 RBM17P2-201ENST00000616397 1405 ntBASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CCDC65Q8IXS2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 AC137761.2-201ENST00000561729 223 ntBASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 AC145350.3-201ENST00000569033 163 ntBASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
CCDC65Q8IXS2 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.27
CCDC65Q8IXS2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 AL162430.1-201ENST00000480705 870 ntBASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CCDC65Q8IXS2 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms