Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 CYP2T3P-201ENST00000601990 817 ntBASIC20.59■□□□□ 0.89
LRRK1Q38SD2 FAM21FP-204ENST00000608637 956 ntBASIC20.59■□□□□ 0.89
LRRK1Q38SD2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 CDV3P1-201ENST00000471403 739 ntBASIC20.58■□□□□ 0.89
LRRK1Q38SD2 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 AC008694.1-202ENST00000636953 945 ntBASIC20.58■□□□□ 0.89
LRRK1Q38SD2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LRRK1Q38SD2 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
LRRK1Q38SD2 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LRRK1Q38SD2 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 FEM1AP4-201ENST00000443167 1987 ntBASIC20.56■□□□□ 0.88
LRRK1Q38SD2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRK1Q38SD2 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 AF106564.1-201ENST00000607058 2553 ntBASIC20.55■□□□□ 0.88
LRRK1Q38SD2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRK1Q38SD2 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 MIPEPP3-201ENST00000412105 444 ntBASIC20.54■□□□□ 0.88
LRRK1Q38SD2 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.54■□□□□ 0.88
LRRK1Q38SD2 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 MCRIP2P1-201ENST00000394346 511 ntBASIC20.54■□□□□ 0.88
LRRK1Q38SD2 RNA5SP413-201ENST00000516373 109 ntBASIC20.54■□□□□ 0.88
LRRK1Q38SD2 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
LRRK1Q38SD2 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms