Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.69■□□□□ 0.74
LIM2P55344 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 AC245052.3-201ENST00000450182 901 ntBASIC19.69■□□□□ 0.74
LIM2P55344 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.69■□□□□ 0.74
LIM2P55344 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.69■□□□□ 0.74
LIM2P55344 RARRES2P11-201ENST00000635158 484 ntBASIC19.69■□□□□ 0.74
LIM2P55344 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.69■□□□□ 0.74
LIM2P55344 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.69■□□□□ 0.74
LIM2P55344 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIM2P55344 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.69■□□□□ 0.74
LIM2P55344 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
LIM2P55344 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.68■□□□□ 0.74
LIM2P55344 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
LIM2P55344 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.68■□□□□ 0.74
LIM2P55344 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.68■□□□□ 0.74
LIM2P55344 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.68■□□□□ 0.74
LIM2P55344 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.68■□□□□ 0.74
LIM2P55344 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIM2P55344 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIM2P55344 MFSD11-216ENST00000590393 1141 ntBASIC19.67■□□□□ 0.74
LIM2P55344 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.67■□□□□ 0.74
LIM2P55344 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
LIM2P55344 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.67■□□□□ 0.74
LIM2P55344 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIM2P55344 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.67■□□□□ 0.74
LIM2P55344 RBM17P2-201ENST00000616397 1405 ntBASIC19.67■□□□□ 0.74
LIM2P55344 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIM2P55344 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.67■□□□□ 0.74
LIM2P55344 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
LIM2P55344 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIM2P55344 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
LIM2P55344 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.66■□□□□ 0.74
LIM2P55344 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIM2P55344 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIM2P55344 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.66■□□□□ 0.74
LIM2P55344 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.66■□□□□ 0.74
LIM2P55344 AC011767.1-201ENST00000617410 1153 ntBASIC19.66■□□□□ 0.74
LIM2P55344 BID-214ENST00000617586 542 ntTSL 5 BASIC19.66■□□□□ 0.74
LIM2P55344 AC010536.3-201ENST00000620306 533 ntBASIC19.66■□□□□ 0.74
LIM2P55344 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LIM2P55344 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIM2P55344 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.66■□□□□ 0.74
LIM2P55344 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIM2P55344 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
LIM2P55344 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LIM2P55344 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.65■□□□□ 0.74
LIM2P55344 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIM2P55344 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.65■□□□□ 0.74
LIM2P55344 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
LIM2P55344 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.65■□□□□ 0.74
LIM2P55344 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LIM2P55344 AC243732.1-201ENST00000612648 864 ntBASIC19.65■□□□□ 0.74
LIM2P55344 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.65■□□□□ 0.74
LIM2P55344 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIM2P55344 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LIM2P55344 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIM2P55344 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIM2P55344 AC004911.1-201ENST00000416316 871 ntBASIC19.64■□□□□ 0.73
LIM2P55344 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.64■□□□□ 0.73
LIM2P55344 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.64■□□□□ 0.73
LIM2P55344 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.64■□□□□ 0.73
LIM2P55344 AL137784.2-201ENST00000607332 1000 ntBASIC19.64■□□□□ 0.73
LIM2P55344 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.64■□□□□ 0.73
LIM2P55344 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms