Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH11P55287 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.92■□□□□ 0.62
CDH11P55287 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.92■□□□□ 0.62
CDH11P55287 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.92■□□□□ 0.62
CDH11P55287 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.92■□□□□ 0.62
CDH11P55287 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.92■□□□□ 0.62
CDH11P55287 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.92■□□□□ 0.62
CDH11P55287 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH11P55287 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CDH11P55287 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH11P55287 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 AC006128.1-201ENST00000624704 1661 ntBASIC18.92■□□□□ 0.62
CDH11P55287 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CDH11P55287 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH11P55287 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH11P55287 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH11P55287 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CDH11P55287 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH11P55287 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH11P55287 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.91■□□□□ 0.62
CDH11P55287 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.91■□□□□ 0.62
CDH11P55287 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.91■□□□□ 0.62
CDH11P55287 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.91■□□□□ 0.62
CDH11P55287 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH11P55287 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CDH11P55287 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.91■□□□□ 0.62
CDH11P55287 GABARAPL3-202ENST00000624044 1851 ntBASIC18.9■□□□□ 0.62
CDH11P55287 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CDH11P55287 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.9■□□□□ 0.62
CDH11P55287 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.9■□□□□ 0.62
CDH11P55287 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.9■□□□□ 0.62
CDH11P55287 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.9■□□□□ 0.62
CDH11P55287 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L2-201ENST00000561772 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 CCDC92B-201ENST00000575506 885 ntBASIC18.9■□□□□ 0.62
CDH11P55287 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CDH11P55287 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.9■□□□□ 0.62
CDH11P55287 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L6-201ENST00000626483 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L1-201ENST00000627662 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L8-201ENST00000629013 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L3-201ENST00000630187 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L7-201ENST00000630678 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 DUX4L5-201ENST00000630834 1275 ntBASIC18.9■□□□□ 0.62
CDH11P55287 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.9■□□□□ 0.62
CDH11P55287 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 LINC02228-203ENST00000641970 1355 ntBASIC18.9■□□□□ 0.62
CDH11P55287 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
CDH11P55287 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
CDH11P55287 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDH11P55287 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CDH11P55287 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CDH11P55287 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CDH11P55287 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CDH11P55287 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH11P55287 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CDH11P55287 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.89■□□□□ 0.61
CDH11P55287 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.89■□□□□ 0.61
CDH11P55287 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.89■□□□□ 0.61
CDH11P55287 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
CDH11P55287 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDH11P55287 AP006587.3-201ENST00000525742 1516 ntBASIC18.89■□□□□ 0.61
CDH11P55287 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms