Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH2P43246 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH2P43246 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
MSH2P43246 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
MSH2P43246 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MSH2P43246 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
MSH2P43246 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH2P43246 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH2P43246 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH2P43246 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
MSH2P43246 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSH2P43246 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.02■□□□□ 0.96
MSH2P43246 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH2P43246 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.02■□□□□ 0.95
MSH2P43246 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.02■□□□□ 0.95
MSH2P43246 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH2P43246 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
MSH2P43246 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
MSH2P43246 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH2P43246 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH2P43246 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH2P43246 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH2P43246 AC008406.3-201ENST00000620001 1374 ntBASIC21.01■□□□□ 0.95
MSH2P43246 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
MSH2P43246 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH2P43246 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH2P43246 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH2P43246 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH2P43246 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH2P43246 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21■□□□□ 0.95
MSH2P43246 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21■□□□□ 0.95
MSH2P43246 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21■□□□□ 0.95
MSH2P43246 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21■□□□□ 0.95
MSH2P43246 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21■□□□□ 0.95
MSH2P43246 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21■□□□□ 0.95
MSH2P43246 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21■□□□□ 0.95
MSH2P43246 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21■□□□□ 0.95
MSH2P43246 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21■□□□□ 0.95
MSH2P43246 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21■□□□□ 0.95
MSH2P43246 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
MSH2P43246 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH2P43246 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21■□□□□ 0.95
MSH2P43246 AC027702.1-201ENST00000563810 1770 ntBASIC21■□□□□ 0.95
MSH2P43246 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
MSH2P43246 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MSH2P43246 AC007225.1-201ENST00000566331 1836 ntBASIC20.99■□□□□ 0.95
MSH2P43246 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH2P43246 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH2P43246 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
MSH2P43246 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH2P43246 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.99■□□□□ 0.95
MSH2P43246 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH2P43246 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
MSH2P43246 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH2P43246 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSH2P43246 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH2P43246 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
MSH2P43246 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MSH2P43246 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms