Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HTTP42858 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
HTTP42858 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HTTP42858 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HTTP42858 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
HTTP42858 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HTTP42858 AC087742.1-201ENST00000575880 1738 ntBASIC23.61■■□□□ 1.37
HTTP42858 KRT8P9-201ENST00000558927 1449 ntBASIC23.6■■□□□ 1.37
HTTP42858 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
HTTP42858 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HTTP42858 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
HTTP42858 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.6■■□□□ 1.37
HTTP42858 P4HB-223ENST00000576390 439 ntTSL 4 BASIC23.6■■□□□ 1.37
HTTP42858 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.6■■□□□ 1.37
HTTP42858 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HTTP42858 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
HTTP42858 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
HTTP42858 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
HTTP42858 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.6■■□□□ 1.37
HTTP42858 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC23.6■■□□□ 1.37
HTTP42858 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC23.6■■□□□ 1.37
HTTP42858 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC23.6■■□□□ 1.37
HTTP42858 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HTTP42858 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HTTP42858 NME3-204ENST00000563498 920 ntTSL 2 BASIC23.59■■□□□ 1.37
HTTP42858 AL590326.2-201ENST00000625139 305 ntBASIC23.59■■□□□ 1.37
HTTP42858 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC23.59■■□□□ 1.37
HTTP42858 CRK-204ENST00000574295 1391 ntTSL 5 BASIC23.59■■□□□ 1.37
HTTP42858 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.59■■□□□ 1.37
HTTP42858 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HTTP42858 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC23.59■■□□□ 1.37
HTTP42858 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
HTTP42858 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HTTP42858 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.59■■□□□ 1.37
HTTP42858 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HTTP42858 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23.59■■□□□ 1.37
HTTP42858 AC091799.1-201ENST00000422823 811 ntBASIC23.59■■□□□ 1.37
HTTP42858 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.59■■□□□ 1.37
HTTP42858 AC026471.6-201ENST00000622954 1905 ntBASIC23.58■■□□□ 1.37
HTTP42858 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.58■■□□□ 1.37
HTTP42858 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
HTTP42858 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HTTP42858 MCRIP2P1-201ENST00000394346 511 ntBASIC23.58■■□□□ 1.37
HTTP42858 KRT18P57-201ENST00000443599 1254 ntBASIC23.58■■□□□ 1.37
HTTP42858 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC23.58■■□□□ 1.37
HTTP42858 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC23.58■■□□□ 1.37
HTTP42858 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
HTTP42858 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.58■■□□□ 1.37
HTTP42858 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
HTTP42858 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
HTTP42858 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.58■■□□□ 1.36
HTTP42858 AC073508.3-201ENST00000619697 1419 ntBASIC23.58■■□□□ 1.36
HTTP42858 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
HTTP42858 CFL2-205ENST00000555765 632 ntTSL 2 BASIC23.57■■□□□ 1.36
HTTP42858 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HTTP42858 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HTTP42858 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC23.57■■□□□ 1.36
HTTP42858 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HTTP42858 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC23.57■■□□□ 1.36
HTTP42858 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.57■■□□□ 1.36
HTTP42858 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HTTP42858 C11orf96-202ENST00000528572 1834 ntBASIC23.56■■□□□ 1.36
HTTP42858 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.56■■□□□ 1.36
HTTP42858 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC23.56■■□□□ 1.36
HTTP42858 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.56■■□□□ 1.36
HTTP42858 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.56■■□□□ 1.36
HTTP42858 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.56■■□□□ 1.36
HTTP42858 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
HTTP42858 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
HTTP42858 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC23.56■■□□□ 1.36
HTTP42858 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
HTTP42858 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
HTTP42858 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
HTTP42858 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.55■■□□□ 1.36
HTTP42858 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC23.55■■□□□ 1.36
HTTP42858 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC23.55■■□□□ 1.36
HTTP42858 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC23.55■■□□□ 1.36
HTTP42858 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HTTP42858 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
HTTP42858 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HTTP42858 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.54■■□□□ 1.36
HTTP42858 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HTTP42858 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
HTTP42858 AC105020.6-201ENST00000621523 1217 ntBASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms