Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.07■□□□□ 0.8
HNF4AP41235 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.07■□□□□ 0.8
HNF4AP41235 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.07■□□□□ 0.8
HNF4AP41235 KRT16P2-201ENST00000414673 1423 ntBASIC20.07■□□□□ 0.8
HNF4AP41235 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HNF4AP41235 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HNF4AP41235 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HNF4AP41235 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HNF4AP41235 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.06■□□□□ 0.8
HNF4AP41235 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HNF4AP41235 AP001160.3-201ENST00000601484 763 ntBASIC20.06■□□□□ 0.8
HNF4AP41235 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HNF4AP41235 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HNF4AP41235 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.05■□□□□ 0.8
HNF4AP41235 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.05■□□□□ 0.8
HNF4AP41235 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
HNF4AP41235 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HNF4AP41235 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.05■□□□□ 0.8
HNF4AP41235 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HNF4AP41235 AL121603.2-201ENST00000557373 2117 ntBASIC20.05■□□□□ 0.8
HNF4AP41235 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.05■□□□□ 0.8
HNF4AP41235 AC121338.2-201ENST00000622535 1744 ntBASIC20.05■□□□□ 0.8
HNF4AP41235 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.04■□□□□ 0.8
HNF4AP41235 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.04■□□□□ 0.8
HNF4AP41235 AC006128.1-201ENST00000624704 1661 ntBASIC20.04■□□□□ 0.8
HNF4AP41235 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.04■□□□□ 0.8
HNF4AP41235 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.04■□□□□ 0.8
HNF4AP41235 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HNF4AP41235 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
HNF4AP41235 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.04■□□□□ 0.8
HNF4AP41235 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
HNF4AP41235 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HNF4AP41235 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HNF4AP41235 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HNF4AP41235 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.03■□□□□ 0.8
HNF4AP41235 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
HNF4AP41235 KRT19P1-201ENST00000405746 1186 ntBASIC20.03■□□□□ 0.8
HNF4AP41235 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.03■□□□□ 0.8
HNF4AP41235 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.03■□□□□ 0.8
HNF4AP41235 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.03■□□□□ 0.8
HNF4AP41235 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HNF4AP41235 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HNF4AP41235 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HNF4AP41235 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.02■□□□□ 0.8
HNF4AP41235 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
HNF4AP41235 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HNF4AP41235 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
HNF4AP41235 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.02■□□□□ 0.8
HNF4AP41235 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.02■□□□□ 0.8
HNF4AP41235 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.02■□□□□ 0.8
HNF4AP41235 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms