Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
HMGA1P17096 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGA1P17096 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.64■■□□□ 1.06
HMGA1P17096 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGA1P17096 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGA1P17096 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGA1P17096 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGA1P17096 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGA1P17096 AL589743.5-201ENST00000616611 1050 ntBASIC21.64■■□□□ 1.05
HMGA1P17096 ITM2C-210ENST00000620962 501 ntBASIC21.64■■□□□ 1.05
HMGA1P17096 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGA1P17096 AC012676.1-201ENST00000574705 1949 ntBASIC21.64■■□□□ 1.05
HMGA1P17096 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGA1P17096 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGA1P17096 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
HMGA1P17096 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGA1P17096 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGA1P17096 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGA1P17096 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGA1P17096 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.63■■□□□ 1.05
HMGA1P17096 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGA1P17096 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGA1P17096 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGA1P17096 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGA1P17096 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGA1P17096 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGA1P17096 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
HMGA1P17096 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGA1P17096 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
HMGA1P17096 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.62■■□□□ 1.05
HMGA1P17096 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
HMGA1P17096 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGA1P17096 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGA1P17096 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
HMGA1P17096 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGA1P17096 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGA1P17096 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGA1P17096 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
HMGA1P17096 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGA1P17096 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGA1P17096 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.61■■□□□ 1.05
HMGA1P17096 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGA1P17096 ESRRAP1-201ENST00000400596 1257 ntBASIC21.61■■□□□ 1.05
HMGA1P17096 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.61■■□□□ 1.05
HMGA1P17096 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGA1P17096 AC008687.6-201ENST00000596318 630 ntBASIC21.61■■□□□ 1.05
HMGA1P17096 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGA1P17096 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGA1P17096 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.61■■□□□ 1.05
HMGA1P17096 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.61■■□□□ 1.05
HMGA1P17096 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.61■■□□□ 1.05
HMGA1P17096 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGA1P17096 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGA1P17096 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.6■■□□□ 1.05
HMGA1P17096 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HMGA1P17096 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.6■■□□□ 1.05
HMGA1P17096 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.6■■□□□ 1.05
HMGA1P17096 EP400NL-214ENST00000641289 2402 ntBASIC21.6■■□□□ 1.05
HMGA1P17096 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGA1P17096 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
HMGA1P17096 PRORSD1P-201ENST00000295112 541 ntBASIC21.59■■□□□ 1.05
HMGA1P17096 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
HMGA1P17096 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGA1P17096 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.59■■□□□ 1.05
HMGA1P17096 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGA1P17096 UNC93B5-201ENST00000530315 699 ntBASIC21.59■■□□□ 1.05
HMGA1P17096 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
HMGA1P17096 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGA1P17096 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.59■■□□□ 1.05
HMGA1P17096 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
HMGA1P17096 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGA1P17096 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGA1P17096 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms