Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL1A1P02452 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC25.14■■□□□ 1.62
COL1A1P02452 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC25.14■■□□□ 1.62
COL1A1P02452 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
COL1A1P02452 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
COL1A1P02452 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC25.14■■□□□ 1.62
COL1A1P02452 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL1A1P02452 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL1A1P02452 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC25.14■■□□□ 1.61
COL1A1P02452 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
COL1A1P02452 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL1A1P02452 AP003097.1-201ENST00000530657 1135 ntBASIC25.14■■□□□ 1.61
COL1A1P02452 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC25.14■■□□□ 1.61
COL1A1P02452 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
COL1A1P02452 CYP21A1P-202ENST00000354927 1481 ntBASIC25.14■■□□□ 1.61
COL1A1P02452 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL1A1P02452 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC25.13■■□□□ 1.61
COL1A1P02452 AL117328.2-201ENST00000624617 1940 ntBASIC25.13■■□□□ 1.61
COL1A1P02452 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL1A1P02452 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL1A1P02452 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
COL1A1P02452 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL1A1P02452 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC25.13■■□□□ 1.61
COL1A1P02452 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
COL1A1P02452 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
COL1A1P02452 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC25.13■■□□□ 1.61
COL1A1P02452 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
COL1A1P02452 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC25.13■■□□□ 1.61
COL1A1P02452 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC25.13■■□□□ 1.61
COL1A1P02452 AC142381.4-202ENST00000563973 229 ntBASIC25.13■■□□□ 1.61
COL1A1P02452 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC25.13■■□□□ 1.61
COL1A1P02452 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC25.13■■□□□ 1.61
COL1A1P02452 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC25.12■■□□□ 1.61
COL1A1P02452 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL1A1P02452 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
COL1A1P02452 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL1A1P02452 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
COL1A1P02452 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC25.12■■□□□ 1.61
COL1A1P02452 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
COL1A1P02452 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
COL1A1P02452 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC25.12■■□□□ 1.61
COL1A1P02452 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
COL1A1P02452 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
COL1A1P02452 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC25.11■■□□□ 1.61
COL1A1P02452 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
COL1A1P02452 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
COL1A1P02452 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC25.11■■□□□ 1.61
COL1A1P02452 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC25.11■■□□□ 1.61
COL1A1P02452 EP400NL-214ENST00000641289 2402 ntBASIC25.11■■□□□ 1.61
COL1A1P02452 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
COL1A1P02452 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.11■■□□□ 1.61
COL1A1P02452 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC25.1■■□□□ 1.61
COL1A1P02452 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
COL1A1P02452 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
COL1A1P02452 MCRIP2P1-201ENST00000394346 511 ntBASIC25.1■■□□□ 1.61
COL1A1P02452 AL158047.1-201ENST00000445918 881 ntBASIC25.1■■□□□ 1.61
COL1A1P02452 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC25.1■■□□□ 1.61
COL1A1P02452 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC25.1■■□□□ 1.61
COL1A1P02452 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.1■■□□□ 1.61
COL1A1P02452 AC012676.1-201ENST00000574705 1949 ntBASIC25.1■■□□□ 1.61
COL1A1P02452 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC25.1■■□□□ 1.61
COL1A1P02452 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
COL1A1P02452 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC25.1■■□□□ 1.61
COL1A1P02452 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
COL1A1P02452 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
COL1A1P02452 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
COL1A1P02452 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.09■■□□□ 1.61
COL1A1P02452 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
COL1A1P02452 LSM12P1-201ENST00000411836 588 ntBASIC25.09■■□□□ 1.61
COL1A1P02452 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC25.09■■□□□ 1.61
COL1A1P02452 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC25.09■■□□□ 1.61
COL1A1P02452 UNC93B4-201ENST00000505679 747 ntBASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms