Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AP000974.1-201ENST00000623909 2387 ntBASIC15.58■□□□□ 0.08
HLA-DQA1P01909 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DQA1P01909 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 AC026471.1-201ENST00000564629 3026 ntBASIC15.57■□□□□ 0.08
HLA-DQA1P01909 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 YBX1P4-201ENST00000392794 808 ntBASIC15.57■□□□□ 0.08
HLA-DQA1P01909 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 REST-206ENST00000612429 1376 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 REST-207ENST00000616975 1370 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 AL162377.1-201ENST00000618844 1793 ntBASIC15.57■□□□□ 0.08
HLA-DQA1P01909 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HLA-DQA1P01909 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 LETM1P2-201ENST00000597330 2178 ntBASIC15.56■□□□□ 0.08
HLA-DQA1P01909 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 AC022616.5-201ENST00000518796 181 ntBASIC15.56■□□□□ 0.08
HLA-DQA1P01909 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 AC019171.1-201ENST00000601251 1056 ntBASIC15.56■□□□□ 0.08
HLA-DQA1P01909 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DQA1P01909 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 USP45-205ENST00000472914 1617 ntTSL 5 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC15.55■□□□□ 0.08
HLA-DQA1P01909 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC15.55■□□□□ 0.08
HLA-DQA1P01909 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms