Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTCD1O75127 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC26.75■■□□□ 1.87
PTCD1O75127 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC26.75■■□□□ 1.87
PTCD1O75127 SLC29A4P2-201ENST00000504749 1089 ntBASIC26.75■■□□□ 1.87
PTCD1O75127 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTCD1O75127 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.75■■□□□ 1.87
PTCD1O75127 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
PTCD1O75127 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC26.75■■□□□ 1.87
PTCD1O75127 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.75■■□□□ 1.87
PTCD1O75127 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTCD1O75127 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
PTCD1O75127 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC26.74■■□□□ 1.87
PTCD1O75127 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC26.74■■□□□ 1.87
PTCD1O75127 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.74■■□□□ 1.87
PTCD1O75127 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC26.74■■□□□ 1.87
PTCD1O75127 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC26.74■■□□□ 1.87
PTCD1O75127 SOX15-203ENST00000570788 1093 ntBASIC26.74■■□□□ 1.87
PTCD1O75127 FAM197Y4-202ENST00000622692 608 ntBASIC26.74■■□□□ 1.87
PTCD1O75127 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC26.74■■□□□ 1.87
PTCD1O75127 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC26.74■■□□□ 1.87
PTCD1O75127 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
PTCD1O75127 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC26.74■■□□□ 1.87
PTCD1O75127 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCD1O75127 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.73■■□□□ 1.87
PTCD1O75127 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC26.73■■□□□ 1.87
PTCD1O75127 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.73■■□□□ 1.87
PTCD1O75127 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 KRT17P3-201ENST00000420566 1262 ntBASIC26.73■■□□□ 1.87
PTCD1O75127 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC26.73■■□□□ 1.87
PTCD1O75127 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.73■■□□□ 1.87
PTCD1O75127 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.73■■□□□ 1.87
PTCD1O75127 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
PTCD1O75127 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC26.73■■□□□ 1.87
PTCD1O75127 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTCD1O75127 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
PTCD1O75127 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC26.72■■□□□ 1.87
PTCD1O75127 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTCD1O75127 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PTCD1O75127 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.72■■□□□ 1.87
PTCD1O75127 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PTCD1O75127 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.72■■□□□ 1.87
PTCD1O75127 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC26.72■■□□□ 1.87
PTCD1O75127 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTCD1O75127 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.72■■□□□ 1.87
PTCD1O75127 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.71■■□□□ 1.87
PTCD1O75127 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.71■■□□□ 1.87
PTCD1O75127 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.71■■□□□ 1.87
PTCD1O75127 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
PTCD1O75127 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.71■■□□□ 1.87
PTCD1O75127 RN7SL471P-201ENST00000580476 299 ntBASIC26.71■■□□□ 1.87
PTCD1O75127 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCD1O75127 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PTCD1O75127 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC26.7■■□□□ 1.87
PTCD1O75127 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
PTCD1O75127 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.7■■□□□ 1.87
PTCD1O75127 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PTCD1O75127 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC26.7■■□□□ 1.87
PTCD1O75127 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC26.7■■□□□ 1.86
PTCD1O75127 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.7■■□□□ 1.86
PTCD1O75127 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.7■■□□□ 1.86
PTCD1O75127 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
PTCD1O75127 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PTCD1O75127 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC26.7■■□□□ 1.86
PTCD1O75127 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD1O75127 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD1O75127 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD1O75127 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTCD1O75127 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
PTCD1O75127 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC26.69■■□□□ 1.86
PTCD1O75127 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC26.69■■□□□ 1.86
PTCD1O75127 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.69■■□□□ 1.86
PTCD1O75127 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms