Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 EEF1DP3-203ENST00000566025 782 ntBASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 AL354811.1-201ENST00000610286 706 ntBASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CPSF4LA6NMK7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 AC142381.2-201ENST00000566120 298 ntBASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 MIR6084-201ENST00000622012 110 ntBASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.09■□□□□ 0.65
CPSF4LA6NMK7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 AC061975.6-201ENST00000579045 1553 ntBASIC19.08■□□□□ 0.65
CPSF4LA6NMK7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 TPRG1LP1-201ENST00000598702 760 ntBASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 AC053503.5-201ENST00000601508 636 ntBASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 AC073314.1-201ENST00000568729 2216 ntBASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
CPSF4LA6NMK7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CPSF4LA6NMK7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CPSF4LA6NMK7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms