Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MBD3L4A6NDZ8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MBD3L4A6NDZ8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MBD3L4A6NDZ8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 ESRRAP1-201ENST00000400596 1257 ntBASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 AC066615.1-201ENST00000640911 628 ntBASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MBD3L4A6NDZ8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 UNC93B5-201ENST00000530315 699 ntBASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 HLA-B-256ENST00000639848 1089 ntBASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD3L4A6NDZ8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 AC060766.5-201ENST00000590539 871 ntBASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 AC105020.6-201ENST00000621523 1217 ntBASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD3L4A6NDZ8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
MBD3L4A6NDZ8 AL117328.2-201ENST00000624617 1940 ntBASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 PRORSD1P-201ENST00000295112 541 ntBASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 AC026366.1-201ENST00000488803 879 ntBASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 AC008687.6-201ENST00000596318 630 ntBASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
MBD3L4A6NDZ8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms