Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 PRKY-204ENST00000533551 1019 ntBASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 SAPCD2P1-201ENST00000395413 1184 ntBASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.37■■□□□ 1.65
ZC3H4Q9UPT8 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 AL023875.1-201ENST00000640777 796 ntBASIC25.36■■□□□ 1.65
ZC3H4Q9UPT8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
ZC3H4Q9UPT8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 AC245052.3-201ENST00000450182 901 ntBASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
ZC3H4Q9UPT8 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
ZC3H4Q9UPT8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC25.33■■□□□ 1.64
ZC3H4Q9UPT8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.33■■□□□ 1.64
ZC3H4Q9UPT8 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.33■■□□□ 1.64
ZC3H4Q9UPT8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
ZC3H4Q9UPT8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms