Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MKS1Q9NXB0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MKS1Q9NXB0 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 AL356441.2-201ENST00000443009 864 ntBASIC20.53■□□□□ 0.88
MKS1Q9NXB0 AC131281.2-201ENST00000520478 145 ntBASIC20.53■□□□□ 0.88
MKS1Q9NXB0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MKS1Q9NXB0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 AC233992.3-201ENST00000607491 485 ntBASIC20.52■□□□□ 0.88
MKS1Q9NXB0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MKS1Q9NXB0 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
MKS1Q9NXB0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.52■□□□□ 0.87
MKS1Q9NXB0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 EEF1DP3-203ENST00000566025 782 ntBASIC20.51■□□□□ 0.87
MKS1Q9NXB0 MIR4767-201ENST00000582827 78 ntBASIC20.51■□□□□ 0.87
MKS1Q9NXB0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.51■□□□□ 0.87
MKS1Q9NXB0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MKS1Q9NXB0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms