Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.07■□□□□ 0.48
NKX3-1Q99801 MIR4767-201ENST00000582827 78 ntBASIC18.07■□□□□ 0.48
NKX3-1Q99801 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.07■□□□□ 0.48
NKX3-1Q99801 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
NKX3-1Q99801 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
NKX3-1Q99801 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 AP005212.1-201ENST00000581547 1997 ntBASIC18.06■□□□□ 0.48
NKX3-1Q99801 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.06■□□□□ 0.48
NKX3-1Q99801 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.06■□□□□ 0.48
NKX3-1Q99801 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
NKX3-1Q99801 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.06■□□□□ 0.48
NKX3-1Q99801 DUX4L19-201ENST00000557448 1267 ntBASIC18.06■□□□□ 0.48
NKX3-1Q99801 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.06■□□□□ 0.48
NKX3-1Q99801 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.06■□□□□ 0.48
NKX3-1Q99801 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NKX3-1Q99801 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 AC005837.3-201ENST00000612163 286 ntBASIC18.05■□□□□ 0.48
NKX3-1Q99801 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.05■□□□□ 0.48
NKX3-1Q99801 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NKX3-1Q99801 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 AC135279.3-201ENST00000610945 1311 ntBASIC18.04■□□□□ 0.48
NKX3-1Q99801 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 AC027702.1-201ENST00000563810 1770 ntBASIC18.04■□□□□ 0.48
NKX3-1Q99801 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.04■□□□□ 0.48
NKX3-1Q99801 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NKX3-1Q99801 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 AC106739.1-201ENST00000617035 715 ntBASIC18.03■□□□□ 0.48
NKX3-1Q99801 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
NKX3-1Q99801 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX3-1Q99801 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX3-1Q99801 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms