Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SHROOM3Q8TF72 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 AC026185.1-201ENST00000445748 174 ntBASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 DUX4L16-201ENST00000555130 1264 ntBASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 AC006128.1-201ENST00000624704 1661 ntBASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHROOM3Q8TF72 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.23■□□□□ 0.99
SHROOM3Q8TF72 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 AC245052.3-201ENST00000450182 901 ntBASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHROOM3Q8TF72 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 KRT18P11-201ENST00000435214 1283 ntBASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 RAP2CP1-201ENST00000605103 478 ntBASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHROOM3Q8TF72 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SHROOM3Q8TF72 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
SHROOM3Q8TF72 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 AC104771.1-201ENST00000603335 964 ntBASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SHROOM3Q8TF72 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHROOM3Q8TF72 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SHROOM3Q8TF72 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms