Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 AC024257.2-201ENST00000549699 147 ntBASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 AC009102.2-201ENST00000606772 1639 ntBASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
ZNF540Q8NDQ6 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 SUDS3P1-201ENST00000505831 966 ntBASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF540Q8NDQ6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF540Q8NDQ6 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
ZNF540Q8NDQ6 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 AL138724.1-201ENST00000606771 1088 ntBASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 AC241377.3-202ENST00000626088 1088 ntBASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 AC241585.3-202ENST00000628937 1088 ntBASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 AC245100.8-202ENST00000629247 1058 ntBASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 AL031602.1-201ENST00000633169 911 ntBASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ZNF540Q8NDQ6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 AL499627.2-201ENST00000606283 725 ntBASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ZNF540Q8NDQ6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF540Q8NDQ6 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms