Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 AC245052.3-201ENST00000450182 901 ntBASIC20.35■□□□□ 0.85
VRK3Q8IV63 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 AC010536.3-201ENST00000620306 533 ntBASIC20.35■□□□□ 0.85
VRK3Q8IV63 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VRK3Q8IV63 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VRK3Q8IV63 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VRK3Q8IV63 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 AC004911.1-201ENST00000416316 871 ntBASIC20.33■□□□□ 0.85
VRK3Q8IV63 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 PLK5-205ENST00000642079 1969 ntBASIC20.33■□□□□ 0.84
VRK3Q8IV63 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 AC091799.1-201ENST00000422823 811 ntBASIC20.32■□□□□ 0.84
VRK3Q8IV63 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 DUX4L16-201ENST00000555130 1264 ntBASIC20.32■□□□□ 0.84
VRK3Q8IV63 AC243732.1-201ENST00000612648 864 ntBASIC20.32■□□□□ 0.84
VRK3Q8IV63 BID-214ENST00000617586 542 ntTSL 5 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 TERF1P5-201ENST00000477545 1207 ntBASIC20.31■□□□□ 0.84
VRK3Q8IV63 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 AL137784.2-201ENST00000607332 1000 ntBASIC20.31■□□□□ 0.84
VRK3Q8IV63 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms