Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 AC245052.3-201ENST00000450182 901 ntBASIC20.35■□□□□ 0.85
VRK3Q8IV63 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 AC010536.3-201ENST00000620306 533 ntBASIC20.35■□□□□ 0.85
VRK3Q8IV63 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VRK3Q8IV63 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.35■□□□□ 0.85
VRK3Q8IV63 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VRK3Q8IV63 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VRK3Q8IV63 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VRK3Q8IV63 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VRK3Q8IV63 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VRK3Q8IV63 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 AC004911.1-201ENST00000416316 871 ntBASIC20.33■□□□□ 0.85
VRK3Q8IV63 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.33■□□□□ 0.85
VRK3Q8IV63 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 PLK5-205ENST00000642079 1969 ntBASIC20.33■□□□□ 0.84
VRK3Q8IV63 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.33■□□□□ 0.84
VRK3Q8IV63 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VRK3Q8IV63 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 AC091799.1-201ENST00000422823 811 ntBASIC20.32■□□□□ 0.84
VRK3Q8IV63 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 DUX4L16-201ENST00000555130 1264 ntBASIC20.32■□□□□ 0.84
VRK3Q8IV63 AC243732.1-201ENST00000612648 864 ntBASIC20.32■□□□□ 0.84
VRK3Q8IV63 BID-214ENST00000617586 542 ntTSL 5 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VRK3Q8IV63 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.32■□□□□ 0.84
VRK3Q8IV63 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 TERF1P5-201ENST00000477545 1207 ntBASIC20.31■□□□□ 0.84
VRK3Q8IV63 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 AL137784.2-201ENST00000607332 1000 ntBASIC20.31■□□□□ 0.84
VRK3Q8IV63 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.31■□□□□ 0.84
VRK3Q8IV63 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VRK3Q8IV63 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms