Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.46■■□□□ 1.19
KRT39Q6A163 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
KRT39Q6A163 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.45■■□□□ 1.19
KRT39Q6A163 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.45■■□□□ 1.18
KRT39Q6A163 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
KRT39Q6A163 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.45■■□□□ 1.18
KRT39Q6A163 AC137761.2-201ENST00000561729 223 ntBASIC22.45■■□□□ 1.18
KRT39Q6A163 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.45■■□□□ 1.18
KRT39Q6A163 AC145350.3-201ENST00000569033 163 ntBASIC22.45■■□□□ 1.18
KRT39Q6A163 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22.45■■□□□ 1.18
KRT39Q6A163 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.45■■□□□ 1.18
KRT39Q6A163 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.45■■□□□ 1.18
KRT39Q6A163 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
KRT39Q6A163 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
KRT39Q6A163 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
KRT39Q6A163 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
KRT39Q6A163 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.44■■□□□ 1.18
KRT39Q6A163 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.44■■□□□ 1.18
KRT39Q6A163 KRT18P11-201ENST00000435214 1283 ntBASIC22.44■■□□□ 1.18
KRT39Q6A163 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC22.44■■□□□ 1.18
KRT39Q6A163 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.44■■□□□ 1.18
KRT39Q6A163 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.44■■□□□ 1.18
KRT39Q6A163 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 AC243732.1-201ENST00000612648 864 ntBASIC22.44■■□□□ 1.18
KRT39Q6A163 AC121338.2-201ENST00000622535 1744 ntBASIC22.44■■□□□ 1.18
KRT39Q6A163 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
KRT39Q6A163 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
KRT39Q6A163 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.43■■□□□ 1.18
KRT39Q6A163 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 RBM17P2-201ENST00000616397 1405 ntBASIC22.43■■□□□ 1.18
KRT39Q6A163 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT39Q6A163 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT39Q6A163 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC22.43■■□□□ 1.18
KRT39Q6A163 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
KRT39Q6A163 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.43■■□□□ 1.18
KRT39Q6A163 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 PLK5-205ENST00000642079 1969 ntBASIC22.43■■□□□ 1.18
KRT39Q6A163 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
KRT39Q6A163 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.42■■□□□ 1.18
KRT39Q6A163 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22.42■■□□□ 1.18
KRT39Q6A163 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.42■■□□□ 1.18
KRT39Q6A163 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.42■■□□□ 1.18
KRT39Q6A163 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
KRT39Q6A163 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
KRT39Q6A163 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT39Q6A163 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT39Q6A163 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
KRT39Q6A163 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
KRT39Q6A163 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
KRT39Q6A163 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT39Q6A163 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
KRT39Q6A163 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT39Q6A163 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT39Q6A163 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
KRT39Q6A163 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.4■■□□□ 1.18
KRT39Q6A163 AC016769.1-201ENST00000409132 1010 ntBASIC22.4■■□□□ 1.18
KRT39Q6A163 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
KRT39Q6A163 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
KRT39Q6A163 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.4■■□□□ 1.18
KRT39Q6A163 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.4■■□□□ 1.18
KRT39Q6A163 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms