Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LRRK1Q38SD2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LRRK1Q38SD2 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
LRRK1Q38SD2 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.64■□□□□ 0.9
LRRK1Q38SD2 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 MIR4651-201ENST00000582622 73 ntBASIC20.64■□□□□ 0.89
LRRK1Q38SD2 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 AC116050.2-201ENST00000612102 1779 ntBASIC20.64■□□□□ 0.89
LRRK1Q38SD2 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LRRK1Q38SD2 KRT17P1-201ENST00000399211 1546 ntBASIC20.64■□□□□ 0.89
LRRK1Q38SD2 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LRRK1Q38SD2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 ABHD17AP1-201ENST00000358206 933 ntBASIC20.62■□□□□ 0.89
LRRK1Q38SD2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.62■□□□□ 0.89
LRRK1Q38SD2 RARRES2P4-201ENST00000514074 484 ntBASIC20.62■□□□□ 0.89
LRRK1Q38SD2 KRT18P6-201ENST00000555540 1265 ntBASIC20.62■□□□□ 0.89
LRRK1Q38SD2 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LRRK1Q38SD2 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 MYC-209ENST00000641252 345 ntBASIC20.61■□□□□ 0.89
LRRK1Q38SD2 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.61■□□□□ 0.89
LRRK1Q38SD2 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 AL024507.2-201ENST00000606070 2574 ntBASIC20.61■□□□□ 0.89
LRRK1Q38SD2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRK1Q38SD2 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 AL356652.1-201ENST00000615962 565 ntBASIC20.6■□□□□ 0.89
LRRK1Q38SD2 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.6■□□□□ 0.89
LRRK1Q38SD2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LRRK1Q38SD2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRK1Q38SD2 AC091874.3-201ENST00000512672 1195 ntBASIC20.59■□□□□ 0.89
LRRK1Q38SD2 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms