Protein–RNA interactions for Protein: P78426

NKX6-1, Homeobox protein Nkx-6.1, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-1P78426 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
NKX6-1P78426 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX6-1P78426 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX6-1P78426 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX6-1P78426 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX6-1P78426 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
NKX6-1P78426 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
NKX6-1P78426 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.27■□□□□ 0.51
NKX6-1P78426 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 ECEL1P1-201ENST00000373592 1742 ntBASIC18.26■□□□□ 0.51
NKX6-1P78426 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NKX6-1P78426 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.26■□□□□ 0.51
NKX6-1P78426 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
NKX6-1P78426 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
NKX6-1P78426 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
NKX6-1P78426 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX6-1P78426 AC026471.6-201ENST00000622954 1905 ntBASIC18.25■□□□□ 0.51
NKX6-1P78426 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX6-1P78426 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX6-1P78426 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 KRT18P29-201ENST00000397031 1267 ntBASIC18.25■□□□□ 0.51
NKX6-1P78426 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.25■□□□□ 0.51
NKX6-1P78426 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX6-1P78426 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NKX6-1P78426 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX6-1P78426 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX6-1P78426 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
NKX6-1P78426 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX6-1P78426 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
NKX6-1P78426 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 POU5F1P3-201ENST00000428824 1078 ntBASIC18.24■□□□□ 0.51
NKX6-1P78426 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
NKX6-1P78426 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX6-1P78426 AC133552.2-202ENST00000575694 574 ntBASIC18.24■□□□□ 0.51
NKX6-1P78426 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.24■□□□□ 0.51
NKX6-1P78426 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.24■□□□□ 0.51
NKX6-1P78426 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
NKX6-1P78426 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
NKX6-1P78426 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.24■□□□□ 0.51
NKX6-1P78426 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
NKX6-1P78426 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.23■□□□□ 0.51
NKX6-1P78426 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.23■□□□□ 0.51
NKX6-1P78426 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NKX6-1P78426 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
NKX6-1P78426 EP400NL-214ENST00000641289 2402 ntBASIC18.22■□□□□ 0.51
NKX6-1P78426 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX6-1P78426 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX6-1P78426 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.22■□□□□ 0.51
NKX6-1P78426 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.22■□□□□ 0.51
NKX6-1P78426 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
NKX6-1P78426 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX6-1P78426 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 KRT18P20-201ENST00000548986 1279 ntBASIC18.22■□□□□ 0.51
NKX6-1P78426 MIR4758-201ENST00000577688 71 ntBASIC18.22■□□□□ 0.51
NKX6-1P78426 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX6-1P78426 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 ITM2C-210ENST00000620962 501 ntBASIC18.22■□□□□ 0.51
NKX6-1P78426 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX6-1P78426 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms