Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.14■□□□□ 0.81
FOXA1P55317 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.14■□□□□ 0.81
FOXA1P55317 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.14■□□□□ 0.81
FOXA1P55317 AC053503.5-201ENST00000601508 636 ntBASIC20.14■□□□□ 0.81
FOXA1P55317 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.14■□□□□ 0.81
FOXA1P55317 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.14■□□□□ 0.81
FOXA1P55317 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.14■□□□□ 0.81
FOXA1P55317 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
FOXA1P55317 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
FOXA1P55317 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.14■□□□□ 0.81
FOXA1P55317 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
FOXA1P55317 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXA1P55317 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.13■□□□□ 0.81
FOXA1P55317 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXA1P55317 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXA1P55317 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXA1P55317 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
FOXA1P55317 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
FOXA1P55317 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXA1P55317 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA1P55317 PCDHAC2-203ENST00000615316 3011 ntBASIC20.12■□□□□ 0.81
FOXA1P55317 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA1P55317 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.12■□□□□ 0.81
FOXA1P55317 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA1P55317 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA1P55317 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA1P55317 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.12■□□□□ 0.81
FOXA1P55317 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.12■□□□□ 0.81
FOXA1P55317 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.12■□□□□ 0.81
FOXA1P55317 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.12■□□□□ 0.81
FOXA1P55317 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
FOXA1P55317 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
FOXA1P55317 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.12■□□□□ 0.81
FOXA1P55317 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA1P55317 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA1P55317 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
FOXA1P55317 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
FOXA1P55317 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA1P55317 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA1P55317 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA1P55317 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.11■□□□□ 0.81
FOXA1P55317 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.11■□□□□ 0.81
FOXA1P55317 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
FOXA1P55317 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.11■□□□□ 0.81
FOXA1P55317 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.11■□□□□ 0.81
FOXA1P55317 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.11■□□□□ 0.81
FOXA1P55317 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
FOXA1P55317 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
FOXA1P55317 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA1P55317 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.1■□□□□ 0.81
FOXA1P55317 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXA1P55317 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
FOXA1P55317 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.1■□□□□ 0.81
FOXA1P55317 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.1■□□□□ 0.81
FOXA1P55317 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXA1P55317 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 MIR6084-201ENST00000622012 110 ntBASIC20.1■□□□□ 0.81
FOXA1P55317 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.1■□□□□ 0.81
FOXA1P55317 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXA1P55317 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA1P55317 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
FOXA1P55317 FP700111.2-201ENST00000619190 1892 ntBASIC20.09■□□□□ 0.81
FOXA1P55317 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
FOXA1P55317 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
FOXA1P55317 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.09■□□□□ 0.81
FOXA1P55317 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.09■□□□□ 0.81
FOXA1P55317 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.09■□□□□ 0.81
FOXA1P55317 AL354811.1-201ENST00000610286 706 ntBASIC20.09■□□□□ 0.81
FOXA1P55317 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
FOXA1P55317 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.09■□□□□ 0.81
FOXA1P55317 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA1P55317 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.81
FOXA1P55317 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.81
FOXA1P55317 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.08■□□□□ 0.81
FOXA1P55317 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA1P55317 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms