Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CDH11P55287 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH11P55287 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CDH11P55287 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.97■□□□□ 0.63
CDH11P55287 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.97■□□□□ 0.63
CDH11P55287 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.97■□□□□ 0.63
CDH11P55287 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CDH11P55287 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.97■□□□□ 0.63
CDH11P55287 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CDH11P55287 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CDH11P55287 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
CDH11P55287 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CDH11P55287 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.96■□□□□ 0.63
CDH11P55287 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.96■□□□□ 0.63
CDH11P55287 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.96■□□□□ 0.63
CDH11P55287 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CDH11P55287 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 AC123595.1-201ENST00000440769 1046 ntBASIC18.95■□□□□ 0.62
CDH11P55287 AC105233.4-201ENST00000642045 216 ntBASIC18.95■□□□□ 0.62
CDH11P55287 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH11P55287 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.95■□□□□ 0.62
CDH11P55287 AL121603.2-201ENST00000557373 2117 ntBASIC18.95■□□□□ 0.62
CDH11P55287 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CDH11P55287 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH11P55287 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CDH11P55287 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH11P55287 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CDH11P55287 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.94■□□□□ 0.62
CDH11P55287 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CDH11P55287 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CDH11P55287 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.94■□□□□ 0.62
CDH11P55287 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH11P55287 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH11P55287 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.94■□□□□ 0.62
CDH11P55287 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CDH11P55287 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.94■□□□□ 0.62
CDH11P55287 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CDH11P55287 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.94■□□□□ 0.62
CDH11P55287 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CDH11P55287 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CDH11P55287 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH11P55287 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.93■□□□□ 0.62
CDH11P55287 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.93■□□□□ 0.62
CDH11P55287 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
CDH11P55287 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CDH11P55287 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.92■□□□□ 0.62
CDH11P55287 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
CDH11P55287 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CDH11P55287 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CDH11P55287 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.92■□□□□ 0.62
CDH11P55287 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CDH11P55287 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms