Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
MSH6P52701 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC29.1■■■□□ 2.25
MSH6P52701 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC29.1■■■□□ 2.25
MSH6P52701 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
MSH6P52701 RARRES2P10-201ENST00000564312 460 ntBASIC29.1■■■□□ 2.25
MSH6P52701 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
MSH6P52701 AL590326.2-201ENST00000625139 305 ntBASIC29.1■■■□□ 2.25
MSH6P52701 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC29.09■■■□□ 2.25
MSH6P52701 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
MSH6P52701 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC29.09■■■□□ 2.25
MSH6P52701 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
MSH6P52701 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC29.09■■■□□ 2.25
MSH6P52701 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
MSH6P52701 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC29.09■■■□□ 2.25
MSH6P52701 AL049597.2-201ENST00000565575 961 ntBASIC29.09■■■□□ 2.25
MSH6P52701 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC29.09■■■□□ 2.25
MSH6P52701 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
MSH6P52701 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC29.09■■■□□ 2.25
MSH6P52701 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC29.09■■■□□ 2.25
MSH6P52701 ANOS2P-203ENST00000472227 1816 ntBASIC29.09■■■□□ 2.25
MSH6P52701 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
MSH6P52701 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC29.08■■■□□ 2.25
MSH6P52701 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC29.08■■■□□ 2.25
MSH6P52701 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC29.08■■■□□ 2.25
MSH6P52701 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC29.08■■■□□ 2.25
MSH6P52701 SAPCD2P1-201ENST00000395413 1184 ntBASIC29.08■■■□□ 2.25
MSH6P52701 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC29.08■■■□□ 2.25
MSH6P52701 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC29.08■■■□□ 2.25
MSH6P52701 AC105020.6-201ENST00000621523 1217 ntBASIC29.08■■■□□ 2.25
MSH6P52701 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
MSH6P52701 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
MSH6P52701 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC29.07■■■□□ 2.24
MSH6P52701 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
MSH6P52701 KRASP1-201ENST00000407852 552 ntBASIC29.07■■■□□ 2.24
MSH6P52701 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC29.07■■■□□ 2.24
MSH6P52701 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC29.07■■■□□ 2.24
MSH6P52701 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC29.07■■■□□ 2.24
MSH6P52701 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
MSH6P52701 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 AC093323.1-202ENST00000635031 2045 ntBASIC29.06■■■□□ 2.24
MSH6P52701 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC29.06■■■□□ 2.24
MSH6P52701 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC29.06■■■□□ 2.24
MSH6P52701 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC29.06■■■□□ 2.24
MSH6P52701 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 THEM4-205ENST00000489410 643 ntTSL 2 BASIC29.06■■■□□ 2.24
MSH6P52701 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC29.06■■■□□ 2.24
MSH6P52701 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC29.06■■■□□ 2.24
MSH6P52701 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
MSH6P52701 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
MSH6P52701 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC29.05■■■□□ 2.24
MSH6P52701 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC29.05■■■□□ 2.24
MSH6P52701 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC29.05■■■□□ 2.24
MSH6P52701 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
MSH6P52701 TPM1-226ENST00000560959 925 ntTSL 2 BASIC29.05■■■□□ 2.24
MSH6P52701 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
MSH6P52701 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC29.05■■■□□ 2.24
MSH6P52701 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
MSH6P52701 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
MSH6P52701 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
MSH6P52701 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC29.04■■■□□ 2.24
MSH6P52701 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC29.04■■■□□ 2.24
MSH6P52701 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
MSH6P52701 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC29.04■■■□□ 2.24
MSH6P52701 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC29.04■■■□□ 2.24
MSH6P52701 AC092865.7-201ENST00000641832 219 ntBASIC29.04■■■□□ 2.24
MSH6P52701 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC29.04■■■□□ 2.24
MSH6P52701 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC29.04■■■□□ 2.24
MSH6P52701 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC29.04■■■□□ 2.24
MSH6P52701 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
MSH6P52701 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
MSH6P52701 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC29.03■■■□□ 2.24
MSH6P52701 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC29.03■■■□□ 2.24
MSH6P52701 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC29.03■■■□□ 2.24
MSH6P52701 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC29.03■■■□□ 2.24
MSH6P52701 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC29.03■■■□□ 2.24
MSH6P52701 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
MSH6P52701 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC29.03■■■□□ 2.24
MSH6P52701 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
MSH6P52701 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
MSH6P52701 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC29.03■■■□□ 2.24
MSH6P52701 CYP21A1P-202ENST00000354927 1481 ntBASIC29.02■■■□□ 2.24
MSH6P52701 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
MSH6P52701 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC29.02■■■□□ 2.24
MSH6P52701 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC29.02■■■□□ 2.24
MSH6P52701 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC29.02■■■□□ 2.24
MSH6P52701 RMI2-205ENST00000576027 818 ntTSL 2 BASIC29.02■■■□□ 2.24
MSH6P52701 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
MSH6P52701 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC29.02■■■□□ 2.24
MSH6P52701 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
MSH6P52701 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC29.02■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms