Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
PTPN9P43378 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
PTPN9P43378 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.64■■□□□ 1.05
PTPN9P43378 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PTPN9P43378 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PTPN9P43378 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTPN9P43378 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
PTPN9P43378 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
PTPN9P43378 AC011484.1-201ENST00000377652 1995 ntBASIC21.63■■□□□ 1.05
PTPN9P43378 PLK5-205ENST00000642079 1969 ntBASIC21.63■■□□□ 1.05
PTPN9P43378 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.63■■□□□ 1.05
PTPN9P43378 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.63■■□□□ 1.05
PTPN9P43378 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PTPN9P43378 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.63■■□□□ 1.05
PTPN9P43378 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTPN9P43378 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTPN9P43378 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTPN9P43378 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.62■■□□□ 1.05
PTPN9P43378 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTPN9P43378 AC016769.1-201ENST00000409132 1010 ntBASIC21.62■■□□□ 1.05
PTPN9P43378 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.62■■□□□ 1.05
PTPN9P43378 AC091799.1-201ENST00000422823 811 ntBASIC21.62■■□□□ 1.05
PTPN9P43378 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.62■■□□□ 1.05
PTPN9P43378 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTPN9P43378 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.62■■□□□ 1.05
PTPN9P43378 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.62■■□□□ 1.05
PTPN9P43378 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.62■■□□□ 1.05
PTPN9P43378 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTPN9P43378 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.62■■□□□ 1.05
PTPN9P43378 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PTPN9P43378 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.61■■□□□ 1.05
PTPN9P43378 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.61■■□□□ 1.05
PTPN9P43378 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.61■■□□□ 1.05
PTPN9P43378 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.61■■□□□ 1.05
PTPN9P43378 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.61■■□□□ 1.05
PTPN9P43378 AC022517.1-201ENST00000592429 346 ntBASIC21.61■■□□□ 1.05
PTPN9P43378 AC010536.3-201ENST00000620306 533 ntBASIC21.61■■□□□ 1.05
PTPN9P43378 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
PTPN9P43378 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.61■■□□□ 1.05
PTPN9P43378 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.61■■□□□ 1.05
PTPN9P43378 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.61■■□□□ 1.05
PTPN9P43378 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PTPN9P43378 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
PTPN9P43378 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 AC006128.1-201ENST00000624704 1661 ntBASIC21.6■■□□□ 1.05
PTPN9P43378 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.6■■□□□ 1.05
PTPN9P43378 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.6■■□□□ 1.05
PTPN9P43378 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.6■■□□□ 1.05
PTPN9P43378 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.6■■□□□ 1.05
PTPN9P43378 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.6■■□□□ 1.05
PTPN9P43378 MFSD11-216ENST00000590393 1141 ntBASIC21.6■■□□□ 1.05
PTPN9P43378 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
PTPN9P43378 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
PTPN9P43378 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PTPN9P43378 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
PTPN9P43378 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PTPN9P43378 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTPN9P43378 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.59■■□□□ 1.05
PTPN9P43378 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTPN9P43378 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
PTPN9P43378 TERF1P5-201ENST00000477545 1207 ntBASIC21.59■■□□□ 1.05
PTPN9P43378 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.59■■□□□ 1.05
PTPN9P43378 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.59■■□□□ 1.05
PTPN9P43378 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.59■■□□□ 1.05
PTPN9P43378 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PTPN9P43378 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PTPN9P43378 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.59■■□□□ 1.05
PTPN9P43378 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms