Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SLC6A4P31645 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.43■■□□□ 1.02
SLC6A4P31645 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SLC6A4P31645 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC6A4P31645 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC6A4P31645 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC6A4P31645 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
SLC6A4P31645 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC6A4P31645 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC6A4P31645 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC6A4P31645 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.42■■□□□ 1.02
SLC6A4P31645 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC6A4P31645 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.42■■□□□ 1.02
SLC6A4P31645 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC6A4P31645 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC6A4P31645 AL138781.1-201ENST00000566567 1274 ntBASIC21.42■■□□□ 1.02
SLC6A4P31645 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC6A4P31645 AC069236.1-201ENST00000604339 616 ntBASIC21.42■■□□□ 1.02
SLC6A4P31645 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.42■■□□□ 1.02
SLC6A4P31645 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.42■■□□□ 1.02
SLC6A4P31645 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
SLC6A4P31645 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC6A4P31645 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
SLC6A4P31645 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC6A4P31645 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.41■■□□□ 1.02
SLC6A4P31645 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.41■■□□□ 1.02
SLC6A4P31645 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
SLC6A4P31645 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
SLC6A4P31645 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC6A4P31645 RARRES2P4-201ENST00000514074 484 ntBASIC21.41■■□□□ 1.02
SLC6A4P31645 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SLC6A4P31645 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
SLC6A4P31645 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC6A4P31645 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SLC6A4P31645 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC6A4P31645 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.4■■□□□ 1.02
SLC6A4P31645 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SLC6A4P31645 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.4■■□□□ 1.02
SLC6A4P31645 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SLC6A4P31645 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SLC6A4P31645 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.4■■□□□ 1.02
SLC6A4P31645 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.4■■□□□ 1.02
SLC6A4P31645 AC008694.1-202ENST00000636953 945 ntBASIC21.4■■□□□ 1.02
SLC6A4P31645 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.4■■□□□ 1.02
SLC6A4P31645 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC6A4P31645 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
SLC6A4P31645 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.39■■□□□ 1.02
SLC6A4P31645 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SLC6A4P31645 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
SLC6A4P31645 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SLC6A4P31645 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.39■■□□□ 1.01
SLC6A4P31645 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.39■■□□□ 1.01
SLC6A4P31645 AC142086.2-201ENST00000569753 217 ntBASIC21.39■■□□□ 1.01
SLC6A4P31645 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SLC6A4P31645 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SLC6A4P31645 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC6A4P31645 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
SLC6A4P31645 SLC29A4P1-201ENST00000398760 971 ntBASIC21.38■■□□□ 1.01
SLC6A4P31645 AL512625.2-201ENST00000417533 625 ntBASIC21.38■■□□□ 1.01
SLC6A4P31645 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.38■■□□□ 1.01
SLC6A4P31645 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.38■■□□□ 1.01
SLC6A4P31645 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.38■■□□□ 1.01
SLC6A4P31645 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.38■■□□□ 1.01
SLC6A4P31645 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.38■■□□□ 1.01
SLC6A4P31645 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC6A4P31645 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
SLC6A4P31645 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC6A4P31645 MKRN4P-201ENST00000444706 1521 ntBASIC21.38■■□□□ 1.01
SLC6A4P31645 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC6A4P31645 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SLC6A4P31645 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.37■■□□□ 1.01
SLC6A4P31645 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
SLC6A4P31645 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.37■■□□□ 1.01
SLC6A4P31645 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 FAM21FP-204ENST00000608637 956 ntBASIC21.37■■□□□ 1.01
SLC6A4P31645 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC6A4P31645 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC6A4P31645 AL024507.2-201ENST00000606070 2574 ntBASIC21.37■■□□□ 1.01
SLC6A4P31645 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SLC6A4P31645 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC6A4P31645 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms