Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.19■□□□□ 0.66
ABCD3P28288 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCD3P28288 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ABCD3P28288 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCD3P28288 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCD3P28288 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
ABCD3P28288 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.18■□□□□ 0.66
ABCD3P28288 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
ABCD3P28288 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCD3P28288 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.18■□□□□ 0.66
ABCD3P28288 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ABCD3P28288 CDCA4P2-201ENST00000441182 718 ntBASIC19.18■□□□□ 0.66
ABCD3P28288 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.18■□□□□ 0.66
ABCD3P28288 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.18■□□□□ 0.66
ABCD3P28288 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.18■□□□□ 0.66
ABCD3P28288 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.18■□□□□ 0.66
ABCD3P28288 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCD3P28288 AC231657.2-201ENST00000624556 255 ntBASIC19.18■□□□□ 0.66
ABCD3P28288 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ABCD3P28288 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.18■□□□□ 0.66
ABCD3P28288 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.17■□□□□ 0.66
ABCD3P28288 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
ABCD3P28288 CNN2P6-201ENST00000439038 900 ntBASIC19.17■□□□□ 0.66
ABCD3P28288 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.17■□□□□ 0.66
ABCD3P28288 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
ABCD3P28288 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ABCD3P28288 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ABCD3P28288 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.16■□□□□ 0.66
ABCD3P28288 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCD3P28288 AC007322.4-201ENST00000509611 723 ntBASIC19.16■□□□□ 0.66
ABCD3P28288 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCD3P28288 RAP2CP1-201ENST00000605103 478 ntBASIC19.16■□□□□ 0.66
ABCD3P28288 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.16■□□□□ 0.66
ABCD3P28288 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
ABCD3P28288 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCD3P28288 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCD3P28288 AF106564.1-201ENST00000607058 2553 ntBASIC19.16■□□□□ 0.66
ABCD3P28288 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.16■□□□□ 0.66
ABCD3P28288 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ABCD3P28288 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ABCD3P28288 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
ABCD3P28288 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCD3P28288 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
ABCD3P28288 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCD3P28288 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ABCD3P28288 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCD3P28288 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
ABCD3P28288 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCD3P28288 AC007322.1-201ENST00000426983 750 ntBASIC19.15■□□□□ 0.66
ABCD3P28288 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCD3P28288 AC007375.3-201ENST00000600936 2314 ntBASIC19.15■□□□□ 0.66
ABCD3P28288 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.15■□□□□ 0.66
ABCD3P28288 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
ABCD3P28288 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
ABCD3P28288 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ABCD3P28288 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.14■□□□□ 0.66
ABCD3P28288 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.14■□□□□ 0.66
ABCD3P28288 AL049796.1-201ENST00000565336 1766 ntBASIC19.14■□□□□ 0.66
ABCD3P28288 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCD3P28288 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ABCD3P28288 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ABCD3P28288 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 AC026185.1-201ENST00000445748 174 ntBASIC19.14■□□□□ 0.65
ABCD3P28288 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCD3P28288 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.14■□□□□ 0.65
ABCD3P28288 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.14■□□□□ 0.65
ABCD3P28288 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.14■□□□□ 0.65
ABCD3P28288 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.14■□□□□ 0.65
ABCD3P28288 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
ABCD3P28288 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
ABCD3P28288 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ABCD3P28288 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCD3P28288 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ABCD3P28288 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.13■□□□□ 0.65
ABCD3P28288 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCD3P28288 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ABCD3P28288 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ABCD3P28288 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.13■□□□□ 0.65
ABCD3P28288 AC091799.1-201ENST00000422823 811 ntBASIC19.13■□□□□ 0.65
ABCD3P28288 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.13■□□□□ 0.65
ABCD3P28288 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms