Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.59■□□□□ 0.41
USF1P22415 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USF1P22415 AC080038.3-201ENST00000623346 1952 ntBASIC17.59■□□□□ 0.41
USF1P22415 AC137767.1-201ENST00000602918 1920 ntBASIC17.59■□□□□ 0.41
USF1P22415 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USF1P22415 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USF1P22415 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.58■□□□□ 0.41
USF1P22415 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USF1P22415 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.41
USF1P22415 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USF1P22415 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.58■□□□□ 0.41
USF1P22415 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.58■□□□□ 0.41
USF1P22415 KRT16P2-201ENST00000414673 1423 ntBASIC17.58■□□□□ 0.41
USF1P22415 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USF1P22415 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
USF1P22415 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.58■□□□□ 0.4
USF1P22415 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.58■□□□□ 0.4
USF1P22415 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
USF1P22415 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.58■□□□□ 0.4
USF1P22415 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.58■□□□□ 0.4
USF1P22415 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.58■□□□□ 0.4
USF1P22415 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.58■□□□□ 0.4
USF1P22415 AL591742.1-201ENST00000604433 565 ntBASIC17.58■□□□□ 0.4
USF1P22415 ITM2C-210ENST00000620962 501 ntBASIC17.58■□□□□ 0.4
USF1P22415 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.4
USF1P22415 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
USF1P22415 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
USF1P22415 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USF1P22415 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
USF1P22415 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
USF1P22415 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.57■□□□□ 0.4
USF1P22415 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
USF1P22415 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
USF1P22415 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.57■□□□□ 0.4
USF1P22415 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.57■□□□□ 0.4
USF1P22415 AL162412.1-201ENST00000567129 965 ntBASIC17.57■□□□□ 0.4
USF1P22415 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
USF1P22415 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.57■□□□□ 0.4
USF1P22415 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
USF1P22415 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USF1P22415 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.57■□□□□ 0.4
USF1P22415 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 C11orf96-202ENST00000528572 1834 ntBASIC17.56■□□□□ 0.4
USF1P22415 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
USF1P22415 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.56■□□□□ 0.4
USF1P22415 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.56■□□□□ 0.4
USF1P22415 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USF1P22415 AC097658.1-201ENST00000475555 843 ntBASIC17.56■□□□□ 0.4
USF1P22415 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.56■□□□□ 0.4
USF1P22415 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.56■□□□□ 0.4
USF1P22415 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.56■□□□□ 0.4
USF1P22415 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USF1P22415 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USF1P22415 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.55■□□□□ 0.4
USF1P22415 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
USF1P22415 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
USF1P22415 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
USF1P22415 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.55■□□□□ 0.4
USF1P22415 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USF1P22415 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
USF1P22415 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.55■□□□□ 0.4
USF1P22415 AC008687.6-201ENST00000596318 630 ntBASIC17.55■□□□□ 0.4
USF1P22415 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
USF1P22415 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.55■□□□□ 0.4
USF1P22415 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms