Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.69■□□□□ 0.9
MSH3P20585 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.69■□□□□ 0.9
MSH3P20585 SLC7A5P1-201ENST00000568957 537 ntBASIC20.69■□□□□ 0.9
MSH3P20585 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 AL024507.2-201ENST00000606070 2574 ntBASIC20.69■□□□□ 0.9
MSH3P20585 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
MSH3P20585 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.69■□□□□ 0.9
MSH3P20585 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSH3P20585 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH3P20585 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH3P20585 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH3P20585 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH3P20585 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
MSH3P20585 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH3P20585 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.68■□□□□ 0.9
MSH3P20585 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.68■□□□□ 0.9
MSH3P20585 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.68■□□□□ 0.9
MSH3P20585 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.68■□□□□ 0.9
MSH3P20585 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.68■□□□□ 0.9
MSH3P20585 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
MSH3P20585 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
MSH3P20585 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MSH3P20585 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH3P20585 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH3P20585 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH3P20585 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH3P20585 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MSH3P20585 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.67■□□□□ 0.9
MSH3P20585 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH3P20585 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH3P20585 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MSH3P20585 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH3P20585 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH3P20585 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH3P20585 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH3P20585 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH3P20585 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.66■□□□□ 0.9
MSH3P20585 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
MSH3P20585 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 BID-214ENST00000617586 542 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH3P20585 AC092437.1-201ENST00000624794 1048 ntBASIC20.66■□□□□ 0.9
MSH3P20585 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH3P20585 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH3P20585 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH3P20585 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH3P20585 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH3P20585 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH3P20585 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH3P20585 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.65■□□□□ 0.9
MSH3P20585 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH3P20585 AC004911.1-201ENST00000416316 871 ntBASIC20.65■□□□□ 0.9
MSH3P20585 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH3P20585 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH3P20585 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.65■□□□□ 0.9
MSH3P20585 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MSH3P20585 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH3P20585 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.65■□□□□ 0.9
MSH3P20585 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH3P20585 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH3P20585 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MSH3P20585 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH3P20585 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH3P20585 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.64■□□□□ 0.9
MSH3P20585 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MSH3P20585 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
MSH3P20585 AC245052.3-201ENST00000450182 901 ntBASIC20.64■□□□□ 0.89
MSH3P20585 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.64■□□□□ 0.89
MSH3P20585 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.64■□□□□ 0.89
MSH3P20585 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
MSH3P20585 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.64■□□□□ 0.89
MSH3P20585 AC011767.1-201ENST00000617410 1153 ntBASIC20.64■□□□□ 0.89
MSH3P20585 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
MSH3P20585 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
MSH3P20585 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.64■□□□□ 0.89
MSH3P20585 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH3P20585 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.63■□□□□ 0.89
MSH3P20585 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms