Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.54■□□□□ 0.88
COL6A2P12110 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.54■□□□□ 0.88
COL6A2P12110 AC008406.3-201ENST00000620001 1374 ntBASIC20.54■□□□□ 0.88
COL6A2P12110 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL6A2P12110 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.54■□□□□ 0.88
COL6A2P12110 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A2P12110 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.53■□□□□ 0.88
COL6A2P12110 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COL6A2P12110 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL6A2P12110 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL6A2P12110 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COL6A2P12110 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A2P12110 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.53■□□□□ 0.88
COL6A2P12110 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.53■□□□□ 0.88
COL6A2P12110 AC012414.1-201ENST00000556676 535 ntBASIC20.53■□□□□ 0.88
COL6A2P12110 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.53■□□□□ 0.88
COL6A2P12110 AP004607.4-201ENST00000530158 1459 ntBASIC20.53■□□□□ 0.88
COL6A2P12110 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL6A2P12110 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.53■□□□□ 0.88
COL6A2P12110 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A2P12110 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A2P12110 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.53■□□□□ 0.88
COL6A2P12110 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 AC011484.1-201ENST00000377652 1995 ntBASIC20.52■□□□□ 0.88
COL6A2P12110 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.52■□□□□ 0.88
COL6A2P12110 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.52■□□□□ 0.88
COL6A2P12110 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.52■□□□□ 0.88
COL6A2P12110 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 MIR939-201ENST00000401314 82 ntBASIC20.52■□□□□ 0.88
COL6A2P12110 AC091305.1-201ENST00000479476 895 ntBASIC20.52■□□□□ 0.88
COL6A2P12110 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
COL6A2P12110 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
COL6A2P12110 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.52■□□□□ 0.88
COL6A2P12110 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL6A2P12110 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A2P12110 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A2P12110 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A2P12110 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL6A2P12110 AC027702.1-201ENST00000563810 1770 ntBASIC20.51■□□□□ 0.87
COL6A2P12110 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL6A2P12110 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A2P12110 AC020907.5-201ENST00000624372 1936 ntBASIC20.51■□□□□ 0.87
COL6A2P12110 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A2P12110 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL6A2P12110 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A2P12110 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A2P12110 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.51■□□□□ 0.87
COL6A2P12110 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.51■□□□□ 0.87
COL6A2P12110 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A2P12110 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A2P12110 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.51■□□□□ 0.87
COL6A2P12110 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A2P12110 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A2P12110 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A2P12110 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A2P12110 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A2P12110 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
COL6A2P12110 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A2P12110 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A2P12110 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A2P12110 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A2P12110 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A2P12110 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.5■□□□□ 0.87
COL6A2P12110 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A2P12110 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL6A2P12110 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A2P12110 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL6A2P12110 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.49■□□□□ 0.87
COL6A2P12110 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.49■□□□□ 0.87
COL6A2P12110 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.49■□□□□ 0.87
COL6A2P12110 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.49■□□□□ 0.87
COL6A2P12110 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A2P12110 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms