Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXD4P09016 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
HOXD4P09016 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HOXD4P09016 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.81■□□□□ 0.6
HOXD4P09016 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 AL591742.1-201ENST00000604433 565 ntBASIC18.81■□□□□ 0.6
HOXD4P09016 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HOXD4P09016 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 AC092053.2-201ENST00000640557 1818 ntBASIC18.81■□□□□ 0.6
HOXD4P09016 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
HOXD4P09016 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXD4P09016 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXD4P09016 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
HOXD4P09016 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXD4P09016 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HOXD4P09016 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXD4P09016 ECEL1P1-201ENST00000373592 1742 ntBASIC18.8■□□□□ 0.6
HOXD4P09016 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXD4P09016 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 GUSBP5-202ENST00000510805 1989 ntBASIC18.79■□□□□ 0.6
HOXD4P09016 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.79■□□□□ 0.6
HOXD4P09016 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 CYP2T1P-201ENST00000432607 1285 ntBASIC18.79■□□□□ 0.6
HOXD4P09016 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.79■□□□□ 0.6
HOXD4P09016 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HOXD4P09016 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.79■□□□□ 0.6
HOXD4P09016 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXD4P09016 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
HOXD4P09016 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXD4P09016 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.78■□□□□ 0.6
HOXD4P09016 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXD4P09016 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HOXD4P09016 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.78■□□□□ 0.6
HOXD4P09016 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HOXD4P09016 FAM201B-201ENST00000458407 597 ntBASIC18.78■□□□□ 0.6
HOXD4P09016 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXD4P09016 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.78■□□□□ 0.6
HOXD4P09016 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HOXD4P09016 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXD4P09016 MKRN4P-201ENST00000444706 1521 ntBASIC18.78■□□□□ 0.6
HOXD4P09016 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXD4P09016 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.78■□□□□ 0.6
HOXD4P09016 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXD4P09016 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HOXD4P09016 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXD4P09016 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HOXD4P09016 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HOXD4P09016 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXD4P09016 RBM17P2-201ENST00000616397 1405 ntBASIC18.77■□□□□ 0.6
HOXD4P09016 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXD4P09016 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXD4P09016 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HOXD4P09016 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXD4P09016 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
HOXD4P09016 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.77■□□□□ 0.6
HOXD4P09016 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.77■□□□□ 0.6
HOXD4P09016 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
HOXD4P09016 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.77■□□□□ 0.6
HOXD4P09016 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.77■□□□□ 0.6
HOXD4P09016 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HOXD4P09016 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
HOXD4P09016 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HOXD4P09016 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
HOXD4P09016 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXD4P09016 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HOXD4P09016 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HOXD4P09016 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.76■□□□□ 0.59
HOXD4P09016 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms