Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.38■□□□□ 0.85
SDC3O75056 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.38■□□□□ 0.85
SDC3O75056 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
SDC3O75056 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SDC3O75056 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.37■□□□□ 0.85
SDC3O75056 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
SDC3O75056 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 AC026366.1-201ENST00000488803 879 ntBASIC20.37■□□□□ 0.85
SDC3O75056 AP003097.1-201ENST00000530657 1135 ntBASIC20.37■□□□□ 0.85
SDC3O75056 AC142381.4-202ENST00000563973 229 ntBASIC20.37■□□□□ 0.85
SDC3O75056 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SDC3O75056 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SDC3O75056 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.36■□□□□ 0.85
SDC3O75056 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.36■□□□□ 0.85
SDC3O75056 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SDC3O75056 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.36■□□□□ 0.85
SDC3O75056 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SDC3O75056 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.36■□□□□ 0.85
SDC3O75056 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.36■□□□□ 0.85
SDC3O75056 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.36■□□□□ 0.85
SDC3O75056 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SDC3O75056 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SDC3O75056 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.35■□□□□ 0.85
SDC3O75056 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.35■□□□□ 0.85
SDC3O75056 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.35■□□□□ 0.85
SDC3O75056 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.35■□□□□ 0.85
SDC3O75056 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.35■□□□□ 0.85
SDC3O75056 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.35■□□□□ 0.85
SDC3O75056 AC073648.6-201ENST00000641589 218 ntBASIC20.35■□□□□ 0.85
SDC3O75056 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.35■□□□□ 0.85
SDC3O75056 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
SDC3O75056 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.34■□□□□ 0.85
SDC3O75056 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.34■□□□□ 0.85
SDC3O75056 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.34■□□□□ 0.85
SDC3O75056 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.34■□□□□ 0.85
SDC3O75056 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SDC3O75056 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.34■□□□□ 0.85
SDC3O75056 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SDC3O75056 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SDC3O75056 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.33■□□□□ 0.85
SDC3O75056 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
SDC3O75056 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SDC3O75056 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
SDC3O75056 AP006294.2-201ENST00000641667 209 ntBASIC20.33■□□□□ 0.85
SDC3O75056 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.33■□□□□ 0.84
SDC3O75056 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SDC3O75056 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.33■□□□□ 0.84
SDC3O75056 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDC3O75056 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDC3O75056 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.32■□□□□ 0.84
SDC3O75056 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDC3O75056 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SDC3O75056 AL589743.5-201ENST00000616611 1050 ntBASIC20.32■□□□□ 0.84
SDC3O75056 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.32■□□□□ 0.84
SDC3O75056 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SDC3O75056 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SDC3O75056 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SDC3O75056 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SDC3O75056 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.31■□□□□ 0.84
SDC3O75056 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms