Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC016769.1-201ENST00000409132 1010 ntBASIC18.25■□□□□ 0.51
LMX1BO60663 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
LMX1BO60663 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LMX1BO60663 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.25■□□□□ 0.51
LMX1BO60663 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.25■□□□□ 0.51
LMX1BO60663 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.24■□□□□ 0.51
LMX1BO60663 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 AC092667.1-201ENST00000434301 2586 ntBASIC18.24■□□□□ 0.51
LMX1BO60663 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
LMX1BO60663 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.24■□□□□ 0.51
LMX1BO60663 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
LMX1BO60663 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
LMX1BO60663 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.24■□□□□ 0.51
LMX1BO60663 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.24■□□□□ 0.51
LMX1BO60663 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 AC080038.1-201ENST00000611274 1154 ntBASIC18.24■□□□□ 0.51
LMX1BO60663 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LMX1BO60663 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
LMX1BO60663 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LMX1BO60663 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.23■□□□□ 0.51
LMX1BO60663 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 LINC01521-201ENST00000504184 1943 ntBASIC18.23■□□□□ 0.51
LMX1BO60663 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 FEM1AP1-201ENST00000431297 1995 ntBASIC18.23■□□□□ 0.51
LMX1BO60663 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.23■□□□□ 0.51
LMX1BO60663 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.23■□□□□ 0.51
LMX1BO60663 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LMX1BO60663 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LMX1BO60663 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.22■□□□□ 0.51
LMX1BO60663 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 AC137761.2-201ENST00000561729 223 ntBASIC18.22■□□□□ 0.51
LMX1BO60663 AC145350.3-201ENST00000569033 163 ntBASIC18.22■□□□□ 0.51
LMX1BO60663 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 PLK5-205ENST00000642079 1969 ntBASIC18.22■□□□□ 0.51
LMX1BO60663 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
LMX1BO60663 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.22■□□□□ 0.51
LMX1BO60663 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LMX1BO60663 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LMX1BO60663 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LMX1BO60663 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.21■□□□□ 0.51
LMX1BO60663 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.21■□□□□ 0.51
LMX1BO60663 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.21■□□□□ 0.51
LMX1BO60663 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.21■□□□□ 0.51
LMX1BO60663 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.21■□□□□ 0.51
LMX1BO60663 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.21■□□□□ 0.51
LMX1BO60663 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.21■□□□□ 0.51
LMX1BO60663 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LMX1BO60663 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.5
LMX1BO60663 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
LMX1BO60663 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.2■□□□□ 0.5
LMX1BO60663 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LMX1BO60663 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.2■□□□□ 0.5
LMX1BO60663 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.2■□□□□ 0.5
LMX1BO60663 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LMX1BO60663 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LMX1BO60663 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.2■□□□□ 0.5
LMX1BO60663 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms