Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.16■□□□□ 0.66
CPSF4LA6NMK7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CPSF4LA6NMK7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CPSF4LA6NMK7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.14■□□□□ 0.66
CPSF4LA6NMK7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CPSF4LA6NMK7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CPSF4LA6NMK7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 AC012414.1-201ENST00000556676 535 ntBASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 AC121338.2-201ENST00000622535 1744 ntBASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CPSF4LA6NMK7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 AC092667.1-201ENST00000434301 2586 ntBASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.13■□□□□ 0.65
CPSF4LA6NMK7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 SUDS3P1-201ENST00000505831 966 ntBASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CPSF4LA6NMK7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 AL139246.5-201ENST00000606645 996 ntBASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.11■□□□□ 0.65
CPSF4LA6NMK7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms