Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMIM28A0A1B0GU29 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 KRT18P6-201ENST00000555540 1265 ntBASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMIM28A0A1B0GU29 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 AC007322.3-201ENST00000426526 701 ntBASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMIM28A0A1B0GU29 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 CD99P1-205ENST00000527459 561 ntBASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 AC100791.3-201ENST00000617619 330 ntBASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 PALM-207ENST00000590161 2137 ntTSL 4 BASIC22.36■■□□□ 1.17
SMIM28A0A1B0GU29 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 AL355472.2-201ENST00000422958 438 ntBASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 AC116050.2-201ENST00000612102 1779 ntBASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SMIM28A0A1B0GU29 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SMIM28A0A1B0GU29 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 Z98882.1-201ENST00000622160 2253 ntBASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SMIM28A0A1B0GU29 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms