Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV1-1A0A0B4J248 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV1-1A0A0B4J248 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 GATM-206ENST00000558336 1522 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 RPS2-202ENST00000526522 924 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV1-1A0A0B4J248 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 FP700111.2-201ENST00000619190 1892 ntBASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 AC125437.2-201ENST00000625180 2167 ntBASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV1-1A0A0B4J248 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV1-1A0A0B4J248 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 LETM1P2-201ENST00000597330 2178 ntBASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 SENP5-202ENST00000419026 973 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV1-1A0A0B4J248 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms